miRNA: 3'- -CUACuUCGGu--CGGUgaaAGCCG-GCAG- -5'
miRNA: 3'- cUACuUCGGUCGGuGAA---------------AGCCGGC-AG- -5'
miRNA: 3'- -CUACUuCGGUCGG------------UGAAa----GCCGGCAG- -5'
miRNA: 3'- -CUACUUCGGUCGGUGAAAGCCGGCAG- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 22710 | 3' | -54.6 | NC_005091.1 | + | 42412 | 0.67 | 0.663766 |
|
Target: 5'- uGAUGcGGCCuucGCCGa--UCGGCuCGUCg -3' miRNA: 3'- -CUACuUCGGu--CGGUgaaAGCCG-GCAG- -5' |
|||||||
| 22710 | 3' | -54.6 | NC_005091.1 | + | 11775 | 0.67 | 0.69035 |
|
Target: 5'- aGUGcGGCCAGUC-CUUcagcaucuguugguaUCGGCCGcUCg -3' miRNA: 3'- cUACuUCGGUCGGuGAA---------------AGCCGGC-AG- -5' |
|||||||
| 22710 | 3' | -54.6 | NC_005091.1 | + | 28062 | 0.66 | 0.707899 |
|
Target: 5'- cGGUGAuGUCGGCUgcauccggcuugACUUggaagCGGCCGUUc -3' miRNA: 3'- -CUACUuCGGUCGG------------UGAAa----GCCGGCAG- -5' |
|||||||
| 22710 | 3' | -54.6 | NC_005091.1 | + | 36612 | 1.1 | 0.000952 |
|
Target: 5'- cGAUGAAGCCAGCCACUUUCGGCCGUCu -3' miRNA: 3'- -CUACUUCGGUCGGUGAAAGCCGGCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home