miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22711 3' -54.4 NC_005091.1 + 54969 0.66 0.797897
Target:  5'- uGUC-CCGUUuucuGCGccccUCGUCCGGCcggGCg -3'
miRNA:   3'- -CAGcGGUAGu---UGC----AGCAGGCCGua-CG- -5'
22711 3' -54.4 NC_005091.1 + 34178 0.66 0.797897
Target:  5'- -gCGUCAUCAacGCGUCGUacgCGGCc-GCu -3'
miRNA:   3'- caGCGGUAGU--UGCAGCAg--GCCGuaCG- -5'
22711 3' -54.4 NC_005091.1 + 23342 0.66 0.797897
Target:  5'- uGUCGCgCAgu-GCGUCGgcgagCUGGUuUGCg -3'
miRNA:   3'- -CAGCG-GUaguUGCAGCa----GGCCGuACG- -5'
22711 3' -54.4 NC_005091.1 + 15396 0.66 0.797897
Target:  5'- cGUCGCuCGUgGugGUaaCGUCCGGagacGCg -3'
miRNA:   3'- -CAGCG-GUAgUugCA--GCAGGCCgua-CG- -5'
22711 3' -54.4 NC_005091.1 + 9196 0.66 0.79693
Target:  5'- cGUCGCCGUgcagcCGGCGacccgaaUCGcgcgguguuUCCGGCgGUGCg -3'
miRNA:   3'- -CAGCGGUA-----GUUGC-------AGC---------AGGCCG-UACG- -5'
22711 3' -54.4 NC_005091.1 + 56158 0.66 0.795962
Target:  5'- uGUCGCCcgCGAUGaaguaggacgcgCGaCCGGCAucuUGCu -3'
miRNA:   3'- -CAGCGGuaGUUGCa-----------GCaGGCCGU---ACG- -5'
22711 3' -54.4 NC_005091.1 + 2625 0.66 0.788157
Target:  5'- gGUCGCCc---ACGUaGUUCGGguUGCg -3'
miRNA:   3'- -CAGCGGuaguUGCAgCAGGCCguACG- -5'
22711 3' -54.4 NC_005091.1 + 17920 0.66 0.788157
Target:  5'- cGUCGCC-UCGGuCGUgCGguagaCGGCcgGCg -3'
miRNA:   3'- -CAGCGGuAGUU-GCA-GCag---GCCGuaCG- -5'
22711 3' -54.4 NC_005091.1 + 10439 0.66 0.778255
Target:  5'- -gCGCCGUCcuCGaUGUCgGGCGcGCg -3'
miRNA:   3'- caGCGGUAGuuGCaGCAGgCCGUaCG- -5'
22711 3' -54.4 NC_005091.1 + 25330 0.66 0.778255
Target:  5'- -aCGCCGUgGGCGaCGUgaUCGGCcucGUGCu -3'
miRNA:   3'- caGCGGUAgUUGCaGCA--GGCCG---UACG- -5'
22711 3' -54.4 NC_005091.1 + 52785 0.66 0.778255
Target:  5'- uUC-CCAgcgCAAagcCGUCGcacuggCCGGCGUGCg -3'
miRNA:   3'- cAGcGGUa--GUU---GCAGCa-----GGCCGUACG- -5'
22711 3' -54.4 NC_005091.1 + 40890 0.66 0.778255
Target:  5'- -gCGCCcaGUCGuuguCGcCGUCCGGUucgGCg -3'
miRNA:   3'- caGCGG--UAGUu---GCaGCAGGCCGua-CG- -5'
22711 3' -54.4 NC_005091.1 + 11655 0.66 0.778255
Target:  5'- -aUGCCGUCAGgaaGUCG-CCGGCcuucaGCg -3'
miRNA:   3'- caGCGGUAGUUg--CAGCaGGCCGua---CG- -5'
22711 3' -54.4 NC_005091.1 + 55801 0.66 0.778255
Target:  5'- --gGCCGUCAGCGUCacgGUCCauccGC-UGCu -3'
miRNA:   3'- cagCGGUAGUUGCAG---CAGGc---CGuACG- -5'
22711 3' -54.4 NC_005091.1 + 366 0.66 0.768202
Target:  5'- uGUCGCUaccGUCGACGcCGUCgugaaGGCG-GCc -3'
miRNA:   3'- -CAGCGG---UAGUUGCaGCAGg----CCGUaCG- -5'
22711 3' -54.4 NC_005091.1 + 24015 0.66 0.768202
Target:  5'- -gCGUCgAUCuuCG-CGUCCGGgAUGCc -3'
miRNA:   3'- caGCGG-UAGuuGCaGCAGGCCgUACG- -5'
22711 3' -54.4 NC_005091.1 + 57760 0.66 0.768202
Target:  5'- uGUCGCUaccGUCGACGcCGUCgugaaGGCG-GCc -3'
miRNA:   3'- -CAGCGG---UAGUUGCaGCAGg----CCGUaCG- -5'
22711 3' -54.4 NC_005091.1 + 41103 0.66 0.75801
Target:  5'- uUCGUC-UCccuCGUCGgccCCGGCcgGCg -3'
miRNA:   3'- cAGCGGuAGuu-GCAGCa--GGCCGuaCG- -5'
22711 3' -54.4 NC_005091.1 + 36283 0.67 0.751832
Target:  5'- -aCGCCAUucauccagaaagacgCAAUGcgcgagCGUCgCGGCGUGCc -3'
miRNA:   3'- caGCGGUA---------------GUUGCa-----GCAG-GCCGUACG- -5'
22711 3' -54.4 NC_005091.1 + 37152 0.67 0.747689
Target:  5'- aUCGCCcacguACG-CGcCCGGCGUGUu -3'
miRNA:   3'- cAGCGGuagu-UGCaGCaGGCCGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.