miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22711 5' -59.5 NC_005091.1 + 6445 0.66 0.550352
Target:  5'- aGGGCAgcgugcgcgcUGCGCugaaggaagcaGGCgCGA-CGGAUGGCg -3'
miRNA:   3'- -UCCGU----------AUGCG-----------CCG-GCUaGCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 24559 0.66 0.550352
Target:  5'- cGGaCGUAUcggucaGCGGUguCGAUCGGgGCGGCg -3'
miRNA:   3'- uCC-GUAUG------CGCCG--GCUAGCC-UGCCGg -5'
22711 5' -59.5 NC_005091.1 + 51151 0.66 0.550352
Target:  5'- -aGCGacGCGCGG-CGAUU-GACGGCCg -3'
miRNA:   3'- ucCGUa-UGCGCCgGCUAGcCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 26643 0.66 0.540043
Target:  5'- -----cGgGCGGUCGAUCGagucGGCGGCCc -3'
miRNA:   3'- uccguaUgCGCCGGCUAGC----CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 49775 0.66 0.5298
Target:  5'- uGGCAUGCagcacgcuCGGCuCGAUCGGcuuCuGCCg -3'
miRNA:   3'- uCCGUAUGc-------GCCG-GCUAGCCu--GcCGG- -5'
22711 5' -59.5 NC_005091.1 + 6026 0.66 0.5298
Target:  5'- aGGGCG-GCGCGGaCGuUCGGGCGuuCg -3'
miRNA:   3'- -UCCGUaUGCGCCgGCuAGCCUGCcgG- -5'
22711 5' -59.5 NC_005091.1 + 16998 0.66 0.5298
Target:  5'- cGGCGUcuggUGgGGCUGggCGGACGGa- -3'
miRNA:   3'- uCCGUAu---GCgCCGGCuaGCCUGCCgg -5'
22711 5' -59.5 NC_005091.1 + 43120 0.66 0.526741
Target:  5'- gGGGCAa--GUGGCCGAUgacugcuuugaCGaccucacugcggacGACGGCCu -3'
miRNA:   3'- -UCCGUaugCGCCGGCUA-----------GC--------------CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 24880 0.66 0.519629
Target:  5'- cGGCcUGCGCaGCaCGG-CGGAauuccuCGGCCu -3'
miRNA:   3'- uCCGuAUGCGcCG-GCUaGCCU------GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 50741 0.66 0.519629
Target:  5'- cGGCGUcgaauaucUGCGGCaCGAgCGGAacgacgaacCGGCCg -3'
miRNA:   3'- uCCGUAu-------GCGCCG-GCUaGCCU---------GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 34047 0.66 0.513564
Target:  5'- aAGGCGUACGuCGGCggugcgaacaacaucCaGAUCG-ACGGCg -3'
miRNA:   3'- -UCCGUAUGC-GCCG---------------G-CUAGCcUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 14188 0.66 0.509536
Target:  5'- cGGCuacUAC-CGGCCGGaaccgcuucgUGGACGGCa -3'
miRNA:   3'- uCCGu--AUGcGCCGGCUa---------GCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 22841 0.66 0.499526
Target:  5'- gAGcGCAcGCGCcugaacGCCGcgCuGACGGCCg -3'
miRNA:   3'- -UC-CGUaUGCGc-----CGGCuaGcCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 2134 0.66 0.499526
Target:  5'- cGGUAaGCGCgucGGCCGAagCGGAacUGGCg -3'
miRNA:   3'- uCCGUaUGCG---CCGGCUa-GCCU--GCCGg -5'
22711 5' -59.5 NC_005091.1 + 26857 0.67 0.479776
Target:  5'- cAGGCGaagACGCGaGCCGGUgCGGcgucGCaGGCg -3'
miRNA:   3'- -UCCGUa--UGCGC-CGGCUA-GCC----UG-CCGg -5'
22711 5' -59.5 NC_005091.1 + 8505 0.67 0.479776
Target:  5'- uGGGCGcACGCGuuCGAgcaucCGGgcuGCGGCCc -3'
miRNA:   3'- -UCCGUaUGCGCcgGCUa----GCC---UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 11469 0.67 0.470045
Target:  5'- aAGcGCAgcgugACGCGGCCGAcgccCGGACucaaacagcggaGGUCc -3'
miRNA:   3'- -UC-CGUa----UGCGCCGGCUa---GCCUG------------CCGG- -5'
22711 5' -59.5 NC_005091.1 + 37227 0.67 0.460415
Target:  5'- gGGcGCGUACGUGGgCGAUUGGuucaacgagacCGuGCCg -3'
miRNA:   3'- -UC-CGUAUGCGCCgGCUAGCCu----------GC-CGG- -5'
22711 5' -59.5 NC_005091.1 + 21622 0.67 0.450891
Target:  5'- -cGCAa--GCGGaUCGAccggCGGGCGGCCg -3'
miRNA:   3'- ucCGUaugCGCC-GGCUa---GCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 26422 0.67 0.449944
Target:  5'- gGGGC-UGCcaucguaGCGGCCGggCGcGAgcaGGCCg -3'
miRNA:   3'- -UCCGuAUG-------CGCCGGCuaGC-CUg--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.