miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22711 5' -59.5 NC_005091.1 + 36775 1.12 0.000301
Target:  5'- cAGGCAUACGCGGCCGAUCGGACGGCCa -3'
miRNA:   3'- -UCCGUAUGCGCCGGCUAGCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 32816 0.82 0.04642
Target:  5'- uGGCGUAgGCGGCCGAguagcaguucgagUCGauGACGGCCa -3'
miRNA:   3'- uCCGUAUgCGCCGGCU-------------AGC--CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 51375 0.76 0.119072
Target:  5'- cGGCuuucUACGCGGCUGuUCGGAagggGGCCu -3'
miRNA:   3'- uCCGu---AUGCGCCGGCuAGCCUg---CCGG- -5'
22711 5' -59.5 NC_005091.1 + 25068 0.76 0.128737
Target:  5'- -cGCAaGCGCGGCguucaacCGAUCGG-CGGCCa -3'
miRNA:   3'- ucCGUaUGCGCCG-------GCUAGCCuGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 8073 0.75 0.139866
Target:  5'- gGGGCugcacguaGCGGCCGAUguaGGAaCGGCCg -3'
miRNA:   3'- -UCCGuaug----CGCCGGCUAg--CCU-GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 54260 0.74 0.159684
Target:  5'- cGGGCAaaACGCGuuGCCGAUCGcGCGGUCu -3'
miRNA:   3'- -UCCGUa-UGCGC--CGGCUAGCcUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 6594 0.74 0.172759
Target:  5'- cAGGCAcgAUGUGGaUCGAgUCGGGCGGCa -3'
miRNA:   3'- -UCCGUa-UGCGCC-GGCU-AGCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 18890 0.73 0.201798
Target:  5'- aAGGCGUggaaguuccGCGUGcGUCGAUCgauucaaggaugGGACGGCCc -3'
miRNA:   3'- -UCCGUA---------UGCGC-CGGCUAG------------CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 44847 0.72 0.223442
Target:  5'- aAGGCAacgACcacgGCGGCCGGcaaGGGCGGCg -3'
miRNA:   3'- -UCCGUa--UG----CGCCGGCUag-CCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 25736 0.72 0.234397
Target:  5'- cAGGCGgaagaacUGCGCGGCCaGcUCGGcgauCGGCUg -3'
miRNA:   3'- -UCCGU-------AUGCGCCGG-CuAGCCu---GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 31799 0.72 0.234986
Target:  5'- cGGCAUuucgGCGCaGCCGAa--GGCGGCCg -3'
miRNA:   3'- uCCGUA----UGCGcCGGCUagcCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 827 0.72 0.240944
Target:  5'- uGGGUGUACgGCGG-CGAUCcuGCGGCCa -3'
miRNA:   3'- -UCCGUAUG-CGCCgGCUAGccUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 22456 0.72 0.247027
Target:  5'- cGGGuCAUcUGCGGCUGGUCGGucagcAUGGCUu -3'
miRNA:   3'- -UCC-GUAuGCGCCGGCUAGCC-----UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 50302 0.71 0.266041
Target:  5'- cGGCu--CGCGGCCGAUCaccCGGCa -3'
miRNA:   3'- uCCGuauGCGCCGGCUAGccuGCCGg -5'
22711 5' -59.5 NC_005091.1 + 5322 0.71 0.279364
Target:  5'- cGGCcg-UGCGGCCagugauguGAUCcgGGGCGGCCg -3'
miRNA:   3'- uCCGuauGCGCCGG--------CUAG--CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 26681 0.71 0.279364
Target:  5'- -uGC-UGCgGCGGCCGG-CGG-CGGCCg -3'
miRNA:   3'- ucCGuAUG-CGCCGGCUaGCCuGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 44901 0.7 0.293213
Target:  5'- gAGGCAauCGCGGaagcaggCGGUaCGGGCGGCg -3'
miRNA:   3'- -UCCGUauGCGCCg------GCUA-GCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 57344 0.7 0.298185
Target:  5'- gGGGCAgUACGCguacGGUCGAugUgaagaugcucgaagCGGGCGGCCa -3'
miRNA:   3'- -UCCGU-AUGCG----CCGGCU--A--------------GCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 24025 0.7 0.300335
Target:  5'- cGGCAUcUGCGGCgGcgaaGGGCGGUCu -3'
miRNA:   3'- uCCGUAuGCGCCGgCuag-CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 22111 0.7 0.307591
Target:  5'- -uGCAUAU-CGGCCGcAUgGGACGGCa -3'
miRNA:   3'- ucCGUAUGcGCCGGC-UAgCCUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.