Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22711 | 5' | -59.5 | NC_005091.1 | + | 56444 | 0.68 | 0.413917 |
Target: 5'- uGGCGUAUGgGGCUucuGGcgGGACGGCa -3' miRNA: 3'- uCCGUAUGCgCCGG---CUagCCUGCCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 26132 | 0.68 | 0.413917 |
Target: 5'- cAGcGCGUGCGCGGCgagcUGAUCGcGcucgccACGGCg -3' miRNA: 3'- -UC-CGUAUGCGCCG----GCUAGC-C------UGCCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 7202 | 0.68 | 0.422074 |
Target: 5'- cGGCAgauggcgGCGCGuuaccuucgucuuGCCGGcagCGG-CGGCCg -3' miRNA: 3'- uCCGUa------UGCGC-------------CGGCUa--GCCuGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 16247 | 0.68 | 0.422986 |
Target: 5'- cGGCAUGCGaUGcGCCGcUCGcGACGaacgcGCCg -3' miRNA: 3'- uCCGUAUGC-GC-CGGCuAGC-CUGC-----CGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 46199 | 0.67 | 0.438673 |
Target: 5'- cGGCcacgaGCGCGGCCucgaacucuggcacGAguggUCGGAgaCGGCCg -3' miRNA: 3'- uCCGua---UGCGCCGG--------------CU----AGCCU--GCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 15844 | 0.67 | 0.440541 |
Target: 5'- cGGCAUGCGUGuuGCCGAgcugCGGuucaucgauacgaAUGGCg -3' miRNA: 3'- uCCGUAUGCGC--CGGCUa---GCC-------------UGCCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 51648 | 0.67 | 0.441476 |
Target: 5'- cGGCuuuccaguuCGCGGCCauUCGGGCGaGCg -3' miRNA: 3'- uCCGuau------GCGCCGGcuAGCCUGC-CGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 31853 | 0.67 | 0.442412 |
Target: 5'- cGGCcUGCucgugccguggaaccCGGCCGccUCGGACGGCUc -3' miRNA: 3'- uCCGuAUGc--------------GCCGGCu-AGCCUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 26422 | 0.67 | 0.449944 |
Target: 5'- gGGGC-UGCcaucguaGCGGCCGggCGcGAgcaGGCCg -3' miRNA: 3'- -UCCGuAUG-------CGCCGGCuaGC-CUg--CCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 21622 | 0.67 | 0.450891 |
Target: 5'- -cGCAa--GCGGaUCGAccggCGGGCGGCCg -3' miRNA: 3'- ucCGUaugCGCC-GGCUa---GCCUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 37227 | 0.67 | 0.460415 |
Target: 5'- gGGcGCGUACGUGGgCGAUUGGuucaacgagacCGuGCCg -3' miRNA: 3'- -UC-CGUAUGCGCCgGCUAGCCu----------GC-CGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 11469 | 0.67 | 0.470045 |
Target: 5'- aAGcGCAgcgugACGCGGCCGAcgccCGGACucaaacagcggaGGUCc -3' miRNA: 3'- -UC-CGUa----UGCGCCGGCUa---GCCUG------------CCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 26857 | 0.67 | 0.479776 |
Target: 5'- cAGGCGaagACGCGaGCCGGUgCGGcgucGCaGGCg -3' miRNA: 3'- -UCCGUa--UGCGC-CGGCUA-GCC----UG-CCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 8505 | 0.67 | 0.479776 |
Target: 5'- uGGGCGcACGCGuuCGAgcaucCGGgcuGCGGCCc -3' miRNA: 3'- -UCCGUaUGCGCcgGCUa----GCC---UGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 2134 | 0.66 | 0.499526 |
Target: 5'- cGGUAaGCGCgucGGCCGAagCGGAacUGGCg -3' miRNA: 3'- uCCGUaUGCG---CCGGCUa-GCCU--GCCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 22841 | 0.66 | 0.499526 |
Target: 5'- gAGcGCAcGCGCcugaacGCCGcgCuGACGGCCg -3' miRNA: 3'- -UC-CGUaUGCGc-----CGGCuaGcCUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 14188 | 0.66 | 0.509536 |
Target: 5'- cGGCuacUAC-CGGCCGGaaccgcuucgUGGACGGCa -3' miRNA: 3'- uCCGu--AUGcGCCGGCUa---------GCCUGCCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 34047 | 0.66 | 0.513564 |
Target: 5'- aAGGCGUACGuCGGCggugcgaacaacaucCaGAUCG-ACGGCg -3' miRNA: 3'- -UCCGUAUGC-GCCG---------------G-CUAGCcUGCCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 50741 | 0.66 | 0.519629 |
Target: 5'- cGGCGUcgaauaucUGCGGCaCGAgCGGAacgacgaacCGGCCg -3' miRNA: 3'- uCCGUAu-------GCGCCG-GCUaGCCU---------GCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 24880 | 0.66 | 0.519629 |
Target: 5'- cGGCcUGCGCaGCaCGG-CGGAauuccuCGGCCu -3' miRNA: 3'- uCCGuAUGCGcCG-GCUaGCCU------GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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