Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22711 | 5' | -59.5 | NC_005091.1 | + | 43120 | 0.66 | 0.526741 |
Target: 5'- gGGGCAa--GUGGCCGAUgacugcuuugaCGaccucacugcggacGACGGCCu -3' miRNA: 3'- -UCCGUaugCGCCGGCUA-----------GC--------------CUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 16998 | 0.66 | 0.5298 |
Target: 5'- cGGCGUcuggUGgGGCUGggCGGACGGa- -3' miRNA: 3'- uCCGUAu---GCgCCGGCuaGCCUGCCgg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 6026 | 0.66 | 0.5298 |
Target: 5'- aGGGCG-GCGCGGaCGuUCGGGCGuuCg -3' miRNA: 3'- -UCCGUaUGCGCCgGCuAGCCUGCcgG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 49775 | 0.66 | 0.5298 |
Target: 5'- uGGCAUGCagcacgcuCGGCuCGAUCGGcuuCuGCCg -3' miRNA: 3'- uCCGUAUGc-------GCCG-GCUAGCCu--GcCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 26643 | 0.66 | 0.540043 |
Target: 5'- -----cGgGCGGUCGAUCGagucGGCGGCCc -3' miRNA: 3'- uccguaUgCGCCGGCUAGC----CUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 24559 | 0.66 | 0.550352 |
Target: 5'- cGGaCGUAUcggucaGCGGUguCGAUCGGgGCGGCg -3' miRNA: 3'- uCC-GUAUG------CGCCG--GCUAGCC-UGCCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 51151 | 0.66 | 0.550352 |
Target: 5'- -aGCGacGCGCGG-CGAUU-GACGGCCg -3' miRNA: 3'- ucCGUa-UGCGCCgGCUAGcCUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 6445 | 0.66 | 0.550352 |
Target: 5'- aGGGCAgcgugcgcgcUGCGCugaaggaagcaGGCgCGA-CGGAUGGCg -3' miRNA: 3'- -UCCGU----------AUGCG-----------CCG-GCUaGCCUGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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