miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22711 5' -59.5 NC_005091.1 + 31853 0.67 0.442412
Target:  5'- cGGCcUGCucgugccguggaaccCGGCCGccUCGGACGGCUc -3'
miRNA:   3'- uCCGuAUGc--------------GCCGGCu-AGCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 51648 0.67 0.441476
Target:  5'- cGGCuuuccaguuCGCGGCCauUCGGGCGaGCg -3'
miRNA:   3'- uCCGuau------GCGCCGGcuAGCCUGC-CGg -5'
22711 5' -59.5 NC_005091.1 + 15844 0.67 0.440541
Target:  5'- cGGCAUGCGUGuuGCCGAgcugCGGuucaucgauacgaAUGGCg -3'
miRNA:   3'- uCCGUAUGCGC--CGGCUa---GCC-------------UGCCGg -5'
22711 5' -59.5 NC_005091.1 + 46199 0.67 0.438673
Target:  5'- cGGCcacgaGCGCGGCCucgaacucuggcacGAguggUCGGAgaCGGCCg -3'
miRNA:   3'- uCCGua---UGCGCCGG--------------CU----AGCCU--GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 16247 0.68 0.422986
Target:  5'- cGGCAUGCGaUGcGCCGcUCGcGACGaacgcGCCg -3'
miRNA:   3'- uCCGUAUGC-GC-CGGCuAGC-CUGC-----CGG- -5'
22711 5' -59.5 NC_005091.1 + 7202 0.68 0.422074
Target:  5'- cGGCAgauggcgGCGCGuuaccuucgucuuGCCGGcagCGG-CGGCCg -3'
miRNA:   3'- uCCGUa------UGCGC-------------CGGCUa--GCCuGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 26132 0.68 0.413917
Target:  5'- cAGcGCGUGCGCGGCgagcUGAUCGcGcucgccACGGCg -3'
miRNA:   3'- -UC-CGUAUGCGCCG----GCUAGC-C------UGCCGg -5'
22711 5' -59.5 NC_005091.1 + 56444 0.68 0.413917
Target:  5'- uGGCGUAUGgGGCUucuGGcgGGACGGCa -3'
miRNA:   3'- uCCGUAUGCgCCGG---CUagCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 37215 0.68 0.413917
Target:  5'- cAGGCGUuccgGCGGCCGGaagaugUCGGcgaGGUCg -3'
miRNA:   3'- -UCCGUAug--CGCCGGCU------AGCCug-CCGG- -5'
22711 5' -59.5 NC_005091.1 + 11858 0.68 0.413917
Target:  5'- cGGCcgAauUGCGGCaUGAaCGGAUGGUCg -3'
miRNA:   3'- uCCGuaU--GCGCCG-GCUaGCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 56974 0.68 0.404969
Target:  5'- aGGGCGUuCGCGGUgaugcucgaaugCGAcgcagagCGGGcCGGCCg -3'
miRNA:   3'- -UCCGUAuGCGCCG------------GCUa------GCCU-GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 21183 0.68 0.404969
Target:  5'- cAGGUAUGCGCGGCgCGAcugcgaguaUCGuGAauGCa -3'
miRNA:   3'- -UCCGUAUGCGCCG-GCU---------AGC-CUgcCGg -5'
22711 5' -59.5 NC_005091.1 + 48644 0.68 0.395268
Target:  5'- uGGCuggcGCGCaGGCCcgaugagGAUCgcucgGGGCGGCCg -3'
miRNA:   3'- uCCGua--UGCG-CCGG-------CUAG-----CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 11876 0.68 0.39352
Target:  5'- cGGCGa--GCGGCCGAUaCcaacagaugcugaaGGACuGGCCg -3'
miRNA:   3'- uCCGUaugCGCCGGCUA-G--------------CCUG-CCGG- -5'
22711 5' -59.5 NC_005091.1 + 14276 0.68 0.387443
Target:  5'- cGGCuu-CGCGGUguCG-UCGGcgaGCGGCCa -3'
miRNA:   3'- uCCGuauGCGCCG--GCuAGCC---UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 19526 0.69 0.378869
Target:  5'- cGGCGauUGCuGGUgcagCGAUUGGACGGUCg -3'
miRNA:   3'- uCCGUauGCG-CCG----GCUAGCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 15324 0.69 0.378869
Target:  5'- cGGUAcacGCGCGGCgGcagCgGGACGGCUa -3'
miRNA:   3'- uCCGUa--UGCGCCGgCua-G-CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 25234 0.69 0.378869
Target:  5'- uGGCG---GCGGUCGGUgcguccgGGGCGGCCg -3'
miRNA:   3'- uCCGUaugCGCCGGCUAg------CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 34434 0.69 0.370424
Target:  5'- cGGCGUgcaguacgacaaGCGCGGCCGGcCGcAgGGCUa -3'
miRNA:   3'- uCCGUA------------UGCGCCGGCUaGCcUgCCGG- -5'
22711 5' -59.5 NC_005091.1 + 51809 0.69 0.353922
Target:  5'- cGGGCGUGCGgcuUGcGCgCGAUUGuGuACGGCCa -3'
miRNA:   3'- -UCCGUAUGC---GC-CG-GCUAGC-C-UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.