miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22711 5' -59.5 NC_005091.1 + 15795 0.69 0.353922
Target:  5'- cGGUuUGCGCGGCCGAaCaguuGAUGcGCCa -3'
miRNA:   3'- uCCGuAUGCGCCGGCUaGc---CUGC-CGG- -5'
22711 5' -59.5 NC_005091.1 + 50153 0.69 0.351492
Target:  5'- cGGCcgcccuucaucAUcACGCGGCCGAauuuggucgggauaUCGGACGGa- -3'
miRNA:   3'- uCCG-----------UA-UGCGCCGGCU--------------AGCCUGCCgg -5'
22711 5' -59.5 NC_005091.1 + 3329 0.69 0.345869
Target:  5'- --uCAUGCGCGGguugaagucaUCGAUCGaGCGGCCg -3'
miRNA:   3'- uccGUAUGCGCC----------GGCUAGCcUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 9387 0.69 0.345869
Target:  5'- cGGCGggaaccauuCGCacggccaGCCGGUCGG-CGGCCa -3'
miRNA:   3'- uCCGUau-------GCGc------CGGCUAGCCuGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 52087 0.7 0.330158
Target:  5'- -cGCAUugGCGCGGCCGuaugcCGugaaaaGGCGGCCg -3'
miRNA:   3'- ucCGUA--UGCGCCGGCua---GC------CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 45326 0.7 0.321744
Target:  5'- cGGGCGcaacGCGCGGCCGGUa-GACGacagagcGCCg -3'
miRNA:   3'- -UCCGUa---UGCGCCGGCUAgcCUGC-------CGG- -5'
22711 5' -59.5 NC_005091.1 + 44225 0.7 0.31498
Target:  5'- cGGCAUACGCc-CCGAucaucugcUCGGcACGGUCg -3'
miRNA:   3'- uCCGUAUGCGccGGCU--------AGCC-UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 11505 0.7 0.312009
Target:  5'- cGGCcgACGUGGCCGccgcgaaacagGGGCaGGCCg -3'
miRNA:   3'- uCCGuaUGCGCCGGCuag--------CCUG-CCGG- -5'
22711 5' -59.5 NC_005091.1 + 22111 0.7 0.307591
Target:  5'- -uGCAUAU-CGGCCGcAUgGGACGGCa -3'
miRNA:   3'- ucCGUAUGcGCCGGC-UAgCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 24025 0.7 0.300335
Target:  5'- cGGCAUcUGCGGCgGcgaaGGGCGGUCu -3'
miRNA:   3'- uCCGUAuGCGCCGgCuag-CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 57344 0.7 0.298185
Target:  5'- gGGGCAgUACGCguacGGUCGAugUgaagaugcucgaagCGGGCGGCCa -3'
miRNA:   3'- -UCCGU-AUGCG----CCGGCU--A--------------GCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 44901 0.7 0.293213
Target:  5'- gAGGCAauCGCGGaagcaggCGGUaCGGGCGGCg -3'
miRNA:   3'- -UCCGUauGCGCCg------GCUA-GCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 26681 0.71 0.279364
Target:  5'- -uGC-UGCgGCGGCCGG-CGG-CGGCCg -3'
miRNA:   3'- ucCGuAUG-CGCCGGCUaGCCuGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 5322 0.71 0.279364
Target:  5'- cGGCcg-UGCGGCCagugauguGAUCcgGGGCGGCCg -3'
miRNA:   3'- uCCGuauGCGCCGG--------CUAG--CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 50302 0.71 0.266041
Target:  5'- cGGCu--CGCGGCCGAUCaccCGGCa -3'
miRNA:   3'- uCCGuauGCGCCGGCUAGccuGCCGg -5'
22711 5' -59.5 NC_005091.1 + 22456 0.72 0.247027
Target:  5'- cGGGuCAUcUGCGGCUGGUCGGucagcAUGGCUu -3'
miRNA:   3'- -UCC-GUAuGCGCCGGCUAGCC-----UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 827 0.72 0.240944
Target:  5'- uGGGUGUACgGCGG-CGAUCcuGCGGCCa -3'
miRNA:   3'- -UCCGUAUG-CGCCgGCUAGccUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 31799 0.72 0.234986
Target:  5'- cGGCAUuucgGCGCaGCCGAa--GGCGGCCg -3'
miRNA:   3'- uCCGUA----UGCGcCGGCUagcCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 25736 0.72 0.234397
Target:  5'- cAGGCGgaagaacUGCGCGGCCaGcUCGGcgauCGGCUg -3'
miRNA:   3'- -UCCGU-------AUGCGCCGG-CuAGCCu---GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 44847 0.72 0.223442
Target:  5'- aAGGCAacgACcacgGCGGCCGGcaaGGGCGGCg -3'
miRNA:   3'- -UCCGUa--UG----CGCCGGCUag-CCUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.