Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 22711 | 5' | -59.5 | NC_005091.1 | + | 18890 | 0.73 | 0.201798 |
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Target: 5'- aAGGCGUggaaguuccGCGUGcGUCGAUCgauucaaggaugGGACGGCCc -3' miRNA: 3'- -UCCGUA---------UGCGC-CGGCUAG------------CCUGCCGG- -5' |
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| 22711 | 5' | -59.5 | NC_005091.1 | + | 6594 | 0.74 | 0.172759 |
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Target: 5'- cAGGCAcgAUGUGGaUCGAgUCGGGCGGCa -3' miRNA: 3'- -UCCGUa-UGCGCC-GGCU-AGCCUGCCGg -5' |
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| 22711 | 5' | -59.5 | NC_005091.1 | + | 54260 | 0.74 | 0.159684 |
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Target: 5'- cGGGCAaaACGCGuuGCCGAUCGcGCGGUCu -3' miRNA: 3'- -UCCGUa-UGCGC--CGGCUAGCcUGCCGG- -5' |
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| 22711 | 5' | -59.5 | NC_005091.1 | + | 8073 | 0.75 | 0.139866 |
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Target: 5'- gGGGCugcacguaGCGGCCGAUguaGGAaCGGCCg -3' miRNA: 3'- -UCCGuaug----CGCCGGCUAg--CCU-GCCGG- -5' |
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| 22711 | 5' | -59.5 | NC_005091.1 | + | 25068 | 0.76 | 0.128737 |
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Target: 5'- -cGCAaGCGCGGCguucaacCGAUCGG-CGGCCa -3' miRNA: 3'- ucCGUaUGCGCCG-------GCUAGCCuGCCGG- -5' |
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| 22711 | 5' | -59.5 | NC_005091.1 | + | 51375 | 0.76 | 0.119072 |
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Target: 5'- cGGCuuucUACGCGGCUGuUCGGAagggGGCCu -3' miRNA: 3'- uCCGu---AUGCGCCGGCuAGCCUg---CCGG- -5' |
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| 22711 | 5' | -59.5 | NC_005091.1 | + | 32816 | 0.82 | 0.04642 |
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Target: 5'- uGGCGUAgGCGGCCGAguagcaguucgagUCGauGACGGCCa -3' miRNA: 3'- uCCGUAUgCGCCGGCU-------------AGC--CUGCCGG- -5' |
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| 22711 | 5' | -59.5 | NC_005091.1 | + | 36775 | 1.12 | 0.000301 |
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Target: 5'- cAGGCAUACGCGGCCGAUCGGACGGCCa -3' miRNA: 3'- -UCCGUAUGCGCCGGCUAGCCUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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