miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22711 5' -59.5 NC_005091.1 + 827 0.72 0.240944
Target:  5'- uGGGUGUACgGCGG-CGAUCcuGCGGCCa -3'
miRNA:   3'- -UCCGUAUG-CGCCgGCUAGccUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 2134 0.66 0.499526
Target:  5'- cGGUAaGCGCgucGGCCGAagCGGAacUGGCg -3'
miRNA:   3'- uCCGUaUGCG---CCGGCUa-GCCU--GCCGg -5'
22711 5' -59.5 NC_005091.1 + 3329 0.69 0.345869
Target:  5'- --uCAUGCGCGGguugaagucaUCGAUCGaGCGGCCg -3'
miRNA:   3'- uccGUAUGCGCC----------GGCUAGCcUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 5322 0.71 0.279364
Target:  5'- cGGCcg-UGCGGCCagugauguGAUCcgGGGCGGCCg -3'
miRNA:   3'- uCCGuauGCGCCGG--------CUAG--CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 6026 0.66 0.5298
Target:  5'- aGGGCG-GCGCGGaCGuUCGGGCGuuCg -3'
miRNA:   3'- -UCCGUaUGCGCCgGCuAGCCUGCcgG- -5'
22711 5' -59.5 NC_005091.1 + 6445 0.66 0.550352
Target:  5'- aGGGCAgcgugcgcgcUGCGCugaaggaagcaGGCgCGA-CGGAUGGCg -3'
miRNA:   3'- -UCCGU----------AUGCG-----------CCG-GCUaGCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 6594 0.74 0.172759
Target:  5'- cAGGCAcgAUGUGGaUCGAgUCGGGCGGCa -3'
miRNA:   3'- -UCCGUa-UGCGCC-GGCU-AGCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 7202 0.68 0.422074
Target:  5'- cGGCAgauggcgGCGCGuuaccuucgucuuGCCGGcagCGG-CGGCCg -3'
miRNA:   3'- uCCGUa------UGCGC-------------CGGCUa--GCCuGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 8073 0.75 0.139866
Target:  5'- gGGGCugcacguaGCGGCCGAUguaGGAaCGGCCg -3'
miRNA:   3'- -UCCGuaug----CGCCGGCUAg--CCU-GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 8505 0.67 0.479776
Target:  5'- uGGGCGcACGCGuuCGAgcaucCGGgcuGCGGCCc -3'
miRNA:   3'- -UCCGUaUGCGCcgGCUa----GCC---UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 9387 0.69 0.345869
Target:  5'- cGGCGggaaccauuCGCacggccaGCCGGUCGG-CGGCCa -3'
miRNA:   3'- uCCGUau-------GCGc------CGGCUAGCCuGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 11469 0.67 0.470045
Target:  5'- aAGcGCAgcgugACGCGGCCGAcgccCGGACucaaacagcggaGGUCc -3'
miRNA:   3'- -UC-CGUa----UGCGCCGGCUa---GCCUG------------CCGG- -5'
22711 5' -59.5 NC_005091.1 + 11505 0.7 0.312009
Target:  5'- cGGCcgACGUGGCCGccgcgaaacagGGGCaGGCCg -3'
miRNA:   3'- uCCGuaUGCGCCGGCuag--------CCUG-CCGG- -5'
22711 5' -59.5 NC_005091.1 + 11858 0.68 0.413917
Target:  5'- cGGCcgAauUGCGGCaUGAaCGGAUGGUCg -3'
miRNA:   3'- uCCGuaU--GCGCCG-GCUaGCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 11876 0.68 0.39352
Target:  5'- cGGCGa--GCGGCCGAUaCcaacagaugcugaaGGACuGGCCg -3'
miRNA:   3'- uCCGUaugCGCCGGCUA-G--------------CCUG-CCGG- -5'
22711 5' -59.5 NC_005091.1 + 14188 0.66 0.509536
Target:  5'- cGGCuacUAC-CGGCCGGaaccgcuucgUGGACGGCa -3'
miRNA:   3'- uCCGu--AUGcGCCGGCUa---------GCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 14276 0.68 0.387443
Target:  5'- cGGCuu-CGCGGUguCG-UCGGcgaGCGGCCa -3'
miRNA:   3'- uCCGuauGCGCCG--GCuAGCC---UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 15324 0.69 0.378869
Target:  5'- cGGUAcacGCGCGGCgGcagCgGGACGGCUa -3'
miRNA:   3'- uCCGUa--UGCGCCGgCua-G-CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 15795 0.69 0.353922
Target:  5'- cGGUuUGCGCGGCCGAaCaguuGAUGcGCCa -3'
miRNA:   3'- uCCGuAUGCGCCGGCUaGc---CUGC-CGG- -5'
22711 5' -59.5 NC_005091.1 + 15844 0.67 0.440541
Target:  5'- cGGCAUGCGUGuuGCCGAgcugCGGuucaucgauacgaAUGGCg -3'
miRNA:   3'- uCCGUAUGCGC--CGGCUa---GCC-------------UGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.