Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22711 | 5' | -59.5 | NC_005091.1 | + | 51375 | 0.76 | 0.119072 |
Target: 5'- cGGCuuucUACGCGGCUGuUCGGAagggGGCCu -3' miRNA: 3'- uCCGu---AUGCGCCGGCuAGCCUg---CCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 51648 | 0.67 | 0.441476 |
Target: 5'- cGGCuuuccaguuCGCGGCCauUCGGGCGaGCg -3' miRNA: 3'- uCCGuau------GCGCCGGcuAGCCUGC-CGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 51809 | 0.69 | 0.353922 |
Target: 5'- cGGGCGUGCGgcuUGcGCgCGAUUGuGuACGGCCa -3' miRNA: 3'- -UCCGUAUGC---GC-CG-GCUAGC-C-UGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 52087 | 0.7 | 0.330158 |
Target: 5'- -cGCAUugGCGCGGCCGuaugcCGugaaaaGGCGGCCg -3' miRNA: 3'- ucCGUA--UGCGCCGGCua---GC------CUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 54260 | 0.74 | 0.159684 |
Target: 5'- cGGGCAaaACGCGuuGCCGAUCGcGCGGUCu -3' miRNA: 3'- -UCCGUa-UGCGC--CGGCUAGCcUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 56444 | 0.68 | 0.413917 |
Target: 5'- uGGCGUAUGgGGCUucuGGcgGGACGGCa -3' miRNA: 3'- uCCGUAUGCgCCGG---CUagCCUGCCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 56974 | 0.68 | 0.404969 |
Target: 5'- aGGGCGUuCGCGGUgaugcucgaaugCGAcgcagagCGGGcCGGCCg -3' miRNA: 3'- -UCCGUAuGCGCCG------------GCUa------GCCU-GCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 57344 | 0.7 | 0.298185 |
Target: 5'- gGGGCAgUACGCguacGGUCGAugUgaagaugcucgaagCGGGCGGCCa -3' miRNA: 3'- -UCCGU-AUGCG----CCGGCU--A--------------GCCUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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