miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22711 5' -59.5 NC_005091.1 + 57344 0.7 0.298185
Target:  5'- gGGGCAgUACGCguacGGUCGAugUgaagaugcucgaagCGGGCGGCCa -3'
miRNA:   3'- -UCCGU-AUGCG----CCGGCU--A--------------GCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 56974 0.68 0.404969
Target:  5'- aGGGCGUuCGCGGUgaugcucgaaugCGAcgcagagCGGGcCGGCCg -3'
miRNA:   3'- -UCCGUAuGCGCCG------------GCUa------GCCU-GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 56444 0.68 0.413917
Target:  5'- uGGCGUAUGgGGCUucuGGcgGGACGGCa -3'
miRNA:   3'- uCCGUAUGCgCCGG---CUagCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 54260 0.74 0.159684
Target:  5'- cGGGCAaaACGCGuuGCCGAUCGcGCGGUCu -3'
miRNA:   3'- -UCCGUa-UGCGC--CGGCUAGCcUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 52087 0.7 0.330158
Target:  5'- -cGCAUugGCGCGGCCGuaugcCGugaaaaGGCGGCCg -3'
miRNA:   3'- ucCGUA--UGCGCCGGCua---GC------CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 51809 0.69 0.353922
Target:  5'- cGGGCGUGCGgcuUGcGCgCGAUUGuGuACGGCCa -3'
miRNA:   3'- -UCCGUAUGC---GC-CG-GCUAGC-C-UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 51648 0.67 0.441476
Target:  5'- cGGCuuuccaguuCGCGGCCauUCGGGCGaGCg -3'
miRNA:   3'- uCCGuau------GCGCCGGcuAGCCUGC-CGg -5'
22711 5' -59.5 NC_005091.1 + 51375 0.76 0.119072
Target:  5'- cGGCuuucUACGCGGCUGuUCGGAagggGGCCu -3'
miRNA:   3'- uCCGu---AUGCGCCGGCuAGCCUg---CCGG- -5'
22711 5' -59.5 NC_005091.1 + 51151 0.66 0.550352
Target:  5'- -aGCGacGCGCGG-CGAUU-GACGGCCg -3'
miRNA:   3'- ucCGUa-UGCGCCgGCUAGcCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 50741 0.66 0.519629
Target:  5'- cGGCGUcgaauaucUGCGGCaCGAgCGGAacgacgaacCGGCCg -3'
miRNA:   3'- uCCGUAu-------GCGCCG-GCUaGCCU---------GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 50302 0.71 0.266041
Target:  5'- cGGCu--CGCGGCCGAUCaccCGGCa -3'
miRNA:   3'- uCCGuauGCGCCGGCUAGccuGCCGg -5'
22711 5' -59.5 NC_005091.1 + 50153 0.69 0.351492
Target:  5'- cGGCcgcccuucaucAUcACGCGGCCGAauuuggucgggauaUCGGACGGa- -3'
miRNA:   3'- uCCG-----------UA-UGCGCCGGCU--------------AGCCUGCCgg -5'
22711 5' -59.5 NC_005091.1 + 49775 0.66 0.5298
Target:  5'- uGGCAUGCagcacgcuCGGCuCGAUCGGcuuCuGCCg -3'
miRNA:   3'- uCCGUAUGc-------GCCG-GCUAGCCu--GcCGG- -5'
22711 5' -59.5 NC_005091.1 + 48644 0.68 0.395268
Target:  5'- uGGCuggcGCGCaGGCCcgaugagGAUCgcucgGGGCGGCCg -3'
miRNA:   3'- uCCGua--UGCG-CCGG-------CUAG-----CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 46199 0.67 0.438673
Target:  5'- cGGCcacgaGCGCGGCCucgaacucuggcacGAguggUCGGAgaCGGCCg -3'
miRNA:   3'- uCCGua---UGCGCCGG--------------CU----AGCCU--GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 45326 0.7 0.321744
Target:  5'- cGGGCGcaacGCGCGGCCGGUa-GACGacagagcGCCg -3'
miRNA:   3'- -UCCGUa---UGCGCCGGCUAgcCUGC-------CGG- -5'
22711 5' -59.5 NC_005091.1 + 44901 0.7 0.293213
Target:  5'- gAGGCAauCGCGGaagcaggCGGUaCGGGCGGCg -3'
miRNA:   3'- -UCCGUauGCGCCg------GCUA-GCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 44847 0.72 0.223442
Target:  5'- aAGGCAacgACcacgGCGGCCGGcaaGGGCGGCg -3'
miRNA:   3'- -UCCGUa--UG----CGCCGGCUag-CCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 44225 0.7 0.31498
Target:  5'- cGGCAUACGCc-CCGAucaucugcUCGGcACGGUCg -3'
miRNA:   3'- uCCGUAUGCGccGGCU--------AGCC-UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 43120 0.66 0.526741
Target:  5'- gGGGCAa--GUGGCCGAUgacugcuuugaCGaccucacugcggacGACGGCCu -3'
miRNA:   3'- -UCCGUaugCGCCGGCUA-----------GC--------------CUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.