miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22711 5' -59.5 NC_005091.1 + 37227 0.67 0.460415
Target:  5'- gGGcGCGUACGUGGgCGAUUGGuucaacgagacCGuGCCg -3'
miRNA:   3'- -UC-CGUAUGCGCCgGCUAGCCu----------GC-CGG- -5'
22711 5' -59.5 NC_005091.1 + 37215 0.68 0.413917
Target:  5'- cAGGCGUuccgGCGGCCGGaagaugUCGGcgaGGUCg -3'
miRNA:   3'- -UCCGUAug--CGCCGGCU------AGCCug-CCGG- -5'
22711 5' -59.5 NC_005091.1 + 36775 1.12 0.000301
Target:  5'- cAGGCAUACGCGGCCGAUCGGACGGCCa -3'
miRNA:   3'- -UCCGUAUGCGCCGGCUAGCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 34434 0.69 0.370424
Target:  5'- cGGCGUgcaguacgacaaGCGCGGCCGGcCGcAgGGCUa -3'
miRNA:   3'- uCCGUA------------UGCGCCGGCUaGCcUgCCGG- -5'
22711 5' -59.5 NC_005091.1 + 34047 0.66 0.513564
Target:  5'- aAGGCGUACGuCGGCggugcgaacaacaucCaGAUCG-ACGGCg -3'
miRNA:   3'- -UCCGUAUGC-GCCG---------------G-CUAGCcUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 32816 0.82 0.04642
Target:  5'- uGGCGUAgGCGGCCGAguagcaguucgagUCGauGACGGCCa -3'
miRNA:   3'- uCCGUAUgCGCCGGCU-------------AGC--CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 31853 0.67 0.442412
Target:  5'- cGGCcUGCucgugccguggaaccCGGCCGccUCGGACGGCUc -3'
miRNA:   3'- uCCGuAUGc--------------GCCGGCu-AGCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 31799 0.72 0.234986
Target:  5'- cGGCAUuucgGCGCaGCCGAa--GGCGGCCg -3'
miRNA:   3'- uCCGUA----UGCGcCGGCUagcCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 26857 0.67 0.479776
Target:  5'- cAGGCGaagACGCGaGCCGGUgCGGcgucGCaGGCg -3'
miRNA:   3'- -UCCGUa--UGCGC-CGGCUA-GCC----UG-CCGg -5'
22711 5' -59.5 NC_005091.1 + 26681 0.71 0.279364
Target:  5'- -uGC-UGCgGCGGCCGG-CGG-CGGCCg -3'
miRNA:   3'- ucCGuAUG-CGCCGGCUaGCCuGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 26643 0.66 0.540043
Target:  5'- -----cGgGCGGUCGAUCGagucGGCGGCCc -3'
miRNA:   3'- uccguaUgCGCCGGCUAGC----CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 26422 0.67 0.449944
Target:  5'- gGGGC-UGCcaucguaGCGGCCGggCGcGAgcaGGCCg -3'
miRNA:   3'- -UCCGuAUG-------CGCCGGCuaGC-CUg--CCGG- -5'
22711 5' -59.5 NC_005091.1 + 26132 0.68 0.413917
Target:  5'- cAGcGCGUGCGCGGCgagcUGAUCGcGcucgccACGGCg -3'
miRNA:   3'- -UC-CGUAUGCGCCG----GCUAGC-C------UGCCGg -5'
22711 5' -59.5 NC_005091.1 + 25736 0.72 0.234397
Target:  5'- cAGGCGgaagaacUGCGCGGCCaGcUCGGcgauCGGCUg -3'
miRNA:   3'- -UCCGU-------AUGCGCCGG-CuAGCCu---GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 25234 0.69 0.378869
Target:  5'- uGGCG---GCGGUCGGUgcguccgGGGCGGCCg -3'
miRNA:   3'- uCCGUaugCGCCGGCUAg------CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 25068 0.76 0.128737
Target:  5'- -cGCAaGCGCGGCguucaacCGAUCGG-CGGCCa -3'
miRNA:   3'- ucCGUaUGCGCCG-------GCUAGCCuGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 24880 0.66 0.519629
Target:  5'- cGGCcUGCGCaGCaCGG-CGGAauuccuCGGCCu -3'
miRNA:   3'- uCCGuAUGCGcCG-GCUaGCCU------GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 24559 0.66 0.550352
Target:  5'- cGGaCGUAUcggucaGCGGUguCGAUCGGgGCGGCg -3'
miRNA:   3'- uCC-GUAUG------CGCCG--GCUAGCC-UGCCGg -5'
22711 5' -59.5 NC_005091.1 + 24025 0.7 0.300335
Target:  5'- cGGCAUcUGCGGCgGcgaaGGGCGGUCu -3'
miRNA:   3'- uCCGUAuGCGCCGgCuag-CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 22841 0.66 0.499526
Target:  5'- gAGcGCAcGCGCcugaacGCCGcgCuGACGGCCg -3'
miRNA:   3'- -UC-CGUaUGCGc-----CGGCuaGcCUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.