Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22711 | 5' | -59.5 | NC_005091.1 | + | 22456 | 0.72 | 0.247027 |
Target: 5'- cGGGuCAUcUGCGGCUGGUCGGucagcAUGGCUu -3' miRNA: 3'- -UCC-GUAuGCGCCGGCUAGCC-----UGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 22111 | 0.7 | 0.307591 |
Target: 5'- -uGCAUAU-CGGCCGcAUgGGACGGCa -3' miRNA: 3'- ucCGUAUGcGCCGGC-UAgCCUGCCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 21622 | 0.67 | 0.450891 |
Target: 5'- -cGCAa--GCGGaUCGAccggCGGGCGGCCg -3' miRNA: 3'- ucCGUaugCGCC-GGCUa---GCCUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 21183 | 0.68 | 0.404969 |
Target: 5'- cAGGUAUGCGCGGCgCGAcugcgaguaUCGuGAauGCa -3' miRNA: 3'- -UCCGUAUGCGCCG-GCU---------AGC-CUgcCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 19526 | 0.69 | 0.378869 |
Target: 5'- cGGCGauUGCuGGUgcagCGAUUGGACGGUCg -3' miRNA: 3'- uCCGUauGCG-CCG----GCUAGCCUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 18890 | 0.73 | 0.201798 |
Target: 5'- aAGGCGUggaaguuccGCGUGcGUCGAUCgauucaaggaugGGACGGCCc -3' miRNA: 3'- -UCCGUA---------UGCGC-CGGCUAG------------CCUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 16998 | 0.66 | 0.5298 |
Target: 5'- cGGCGUcuggUGgGGCUGggCGGACGGa- -3' miRNA: 3'- uCCGUAu---GCgCCGGCuaGCCUGCCgg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 16247 | 0.68 | 0.422986 |
Target: 5'- cGGCAUGCGaUGcGCCGcUCGcGACGaacgcGCCg -3' miRNA: 3'- uCCGUAUGC-GC-CGGCuAGC-CUGC-----CGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 15844 | 0.67 | 0.440541 |
Target: 5'- cGGCAUGCGUGuuGCCGAgcugCGGuucaucgauacgaAUGGCg -3' miRNA: 3'- uCCGUAUGCGC--CGGCUa---GCC-------------UGCCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 15795 | 0.69 | 0.353922 |
Target: 5'- cGGUuUGCGCGGCCGAaCaguuGAUGcGCCa -3' miRNA: 3'- uCCGuAUGCGCCGGCUaGc---CUGC-CGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 15324 | 0.69 | 0.378869 |
Target: 5'- cGGUAcacGCGCGGCgGcagCgGGACGGCUa -3' miRNA: 3'- uCCGUa--UGCGCCGgCua-G-CCUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 14276 | 0.68 | 0.387443 |
Target: 5'- cGGCuu-CGCGGUguCG-UCGGcgaGCGGCCa -3' miRNA: 3'- uCCGuauGCGCCG--GCuAGCC---UGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 14188 | 0.66 | 0.509536 |
Target: 5'- cGGCuacUAC-CGGCCGGaaccgcuucgUGGACGGCa -3' miRNA: 3'- uCCGu--AUGcGCCGGCUa---------GCCUGCCGg -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 11876 | 0.68 | 0.39352 |
Target: 5'- cGGCGa--GCGGCCGAUaCcaacagaugcugaaGGACuGGCCg -3' miRNA: 3'- uCCGUaugCGCCGGCUA-G--------------CCUG-CCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 11858 | 0.68 | 0.413917 |
Target: 5'- cGGCcgAauUGCGGCaUGAaCGGAUGGUCg -3' miRNA: 3'- uCCGuaU--GCGCCG-GCUaGCCUGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 11505 | 0.7 | 0.312009 |
Target: 5'- cGGCcgACGUGGCCGccgcgaaacagGGGCaGGCCg -3' miRNA: 3'- uCCGuaUGCGCCGGCuag--------CCUG-CCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 11469 | 0.67 | 0.470045 |
Target: 5'- aAGcGCAgcgugACGCGGCCGAcgccCGGACucaaacagcggaGGUCc -3' miRNA: 3'- -UC-CGUa----UGCGCCGGCUa---GCCUG------------CCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 9387 | 0.69 | 0.345869 |
Target: 5'- cGGCGggaaccauuCGCacggccaGCCGGUCGG-CGGCCa -3' miRNA: 3'- uCCGUau-------GCGc------CGGCUAGCCuGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 8505 | 0.67 | 0.479776 |
Target: 5'- uGGGCGcACGCGuuCGAgcaucCGGgcuGCGGCCc -3' miRNA: 3'- -UCCGUaUGCGCcgGCUa----GCC---UGCCGG- -5' |
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22711 | 5' | -59.5 | NC_005091.1 | + | 8073 | 0.75 | 0.139866 |
Target: 5'- gGGGCugcacguaGCGGCCGAUguaGGAaCGGCCg -3' miRNA: 3'- -UCCGuaug----CGCCGGCUAg--CCU-GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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