miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22711 5' -59.5 NC_005091.1 + 8505 0.67 0.479776
Target:  5'- uGGGCGcACGCGuuCGAgcaucCGGgcuGCGGCCc -3'
miRNA:   3'- -UCCGUaUGCGCcgGCUa----GCC---UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 15795 0.69 0.353922
Target:  5'- cGGUuUGCGCGGCCGAaCaguuGAUGcGCCa -3'
miRNA:   3'- uCCGuAUGCGCCGGCUaGc---CUGC-CGG- -5'
22711 5' -59.5 NC_005091.1 + 51809 0.69 0.353922
Target:  5'- cGGGCGUGCGgcuUGcGCgCGAUUGuGuACGGCCa -3'
miRNA:   3'- -UCCGUAUGC---GC-CG-GCUAGC-C-UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 37215 0.68 0.413917
Target:  5'- cAGGCGUuccgGCGGCCGGaagaugUCGGcgaGGUCg -3'
miRNA:   3'- -UCCGUAug--CGCCGGCU------AGCCug-CCGG- -5'
22711 5' -59.5 NC_005091.1 + 11858 0.68 0.413917
Target:  5'- cGGCcgAauUGCGGCaUGAaCGGAUGGUCg -3'
miRNA:   3'- uCCGuaU--GCGCCG-GCUaGCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 16247 0.68 0.422986
Target:  5'- cGGCAUGCGaUGcGCCGcUCGcGACGaacgcGCCg -3'
miRNA:   3'- uCCGUAUGC-GC-CGGCuAGC-CUGC-----CGG- -5'
22711 5' -59.5 NC_005091.1 + 46199 0.67 0.438673
Target:  5'- cGGCcacgaGCGCGGCCucgaacucuggcacGAguggUCGGAgaCGGCCg -3'
miRNA:   3'- uCCGua---UGCGCCGG--------------CU----AGCCU--GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 51648 0.67 0.441476
Target:  5'- cGGCuuuccaguuCGCGGCCauUCGGGCGaGCg -3'
miRNA:   3'- uCCGuau------GCGCCGGcuAGCCUGC-CGg -5'
22711 5' -59.5 NC_005091.1 + 21622 0.67 0.450891
Target:  5'- -cGCAa--GCGGaUCGAccggCGGGCGGCCg -3'
miRNA:   3'- ucCGUaugCGCC-GGCUa---GCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 50153 0.69 0.351492
Target:  5'- cGGCcgcccuucaucAUcACGCGGCCGAauuuggucgggauaUCGGACGGa- -3'
miRNA:   3'- uCCG-----------UA-UGCGCCGGCU--------------AGCCUGCCgg -5'
22711 5' -59.5 NC_005091.1 + 52087 0.7 0.330158
Target:  5'- -cGCAUugGCGCGGCCGuaugcCGugaaaaGGCGGCCg -3'
miRNA:   3'- ucCGUA--UGCGCCGGCua---GC------CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 22111 0.7 0.307591
Target:  5'- -uGCAUAU-CGGCCGcAUgGGACGGCa -3'
miRNA:   3'- ucCGUAUGcGCCGGC-UAgCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 32816 0.82 0.04642
Target:  5'- uGGCGUAgGCGGCCGAguagcaguucgagUCGauGACGGCCa -3'
miRNA:   3'- uCCGUAUgCGCCGGCU-------------AGC--CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 25068 0.76 0.128737
Target:  5'- -cGCAaGCGCGGCguucaacCGAUCGG-CGGCCa -3'
miRNA:   3'- ucCGUaUGCGCCG-------GCUAGCCuGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 8073 0.75 0.139866
Target:  5'- gGGGCugcacguaGCGGCCGAUguaGGAaCGGCCg -3'
miRNA:   3'- -UCCGuaug----CGCCGGCUAg--CCU-GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 54260 0.74 0.159684
Target:  5'- cGGGCAaaACGCGuuGCCGAUCGcGCGGUCu -3'
miRNA:   3'- -UCCGUa-UGCGC--CGGCUAGCcUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 827 0.72 0.240944
Target:  5'- uGGGUGUACgGCGG-CGAUCcuGCGGCCa -3'
miRNA:   3'- -UCCGUAUG-CGCCgGCUAGccUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 22456 0.72 0.247027
Target:  5'- cGGGuCAUcUGCGGCUGGUCGGucagcAUGGCUu -3'
miRNA:   3'- -UCC-GUAuGCGCCGGCUAGCC-----UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 50302 0.71 0.266041
Target:  5'- cGGCu--CGCGGCCGAUCaccCGGCa -3'
miRNA:   3'- uCCGuauGCGCCGGCUAGccuGCCGg -5'
22711 5' -59.5 NC_005091.1 + 57344 0.7 0.298185
Target:  5'- gGGGCAgUACGCguacGGUCGAugUgaagaugcucgaagCGGGCGGCCa -3'
miRNA:   3'- -UCCGU-AUGCG----CCGGCU--A--------------GCCUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.