miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22711 5' -59.5 NC_005091.1 + 827 0.72 0.240944
Target:  5'- uGGGUGUACgGCGG-CGAUCcuGCGGCCa -3'
miRNA:   3'- -UCCGUAUG-CGCCgGCUAGccUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 22456 0.72 0.247027
Target:  5'- cGGGuCAUcUGCGGCUGGUCGGucagcAUGGCUu -3'
miRNA:   3'- -UCC-GUAuGCGCCGGCUAGCC-----UGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 50302 0.71 0.266041
Target:  5'- cGGCu--CGCGGCCGAUCaccCGGCa -3'
miRNA:   3'- uCCGuauGCGCCGGCUAGccuGCCGg -5'
22711 5' -59.5 NC_005091.1 + 57344 0.7 0.298185
Target:  5'- gGGGCAgUACGCguacGGUCGAugUgaagaugcucgaagCGGGCGGCCa -3'
miRNA:   3'- -UCCGU-AUGCG----CCGGCU--A--------------GCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 22111 0.7 0.307591
Target:  5'- -uGCAUAU-CGGCCGcAUgGGACGGCa -3'
miRNA:   3'- ucCGUAUGcGCCGGC-UAgCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 52087 0.7 0.330158
Target:  5'- -cGCAUugGCGCGGCCGuaugcCGugaaaaGGCGGCCg -3'
miRNA:   3'- ucCGUA--UGCGCCGGCua---GC------CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 50153 0.69 0.351492
Target:  5'- cGGCcgcccuucaucAUcACGCGGCCGAauuuggucgggauaUCGGACGGa- -3'
miRNA:   3'- uCCG-----------UA-UGCGCCGGCU--------------AGCCUGCCgg -5'
22711 5' -59.5 NC_005091.1 + 15795 0.69 0.353922
Target:  5'- cGGUuUGCGCGGCCGAaCaguuGAUGcGCCa -3'
miRNA:   3'- uCCGuAUGCGCCGGCUaGc---CUGC-CGG- -5'
22711 5' -59.5 NC_005091.1 + 26857 0.67 0.479776
Target:  5'- cAGGCGaagACGCGaGCCGGUgCGGcgucGCaGGCg -3'
miRNA:   3'- -UCCGUa--UGCGC-CGGCUA-GCC----UG-CCGg -5'
22711 5' -59.5 NC_005091.1 + 11469 0.67 0.470045
Target:  5'- aAGcGCAgcgugACGCGGCCGAcgccCGGACucaaacagcggaGGUCc -3'
miRNA:   3'- -UC-CGUa----UGCGCCGGCUa---GCCUG------------CCGG- -5'
22711 5' -59.5 NC_005091.1 + 37227 0.67 0.460415
Target:  5'- gGGcGCGUACGUGGgCGAUUGGuucaacgagacCGuGCCg -3'
miRNA:   3'- -UC-CGUAUGCGCCgGCUAGCCu----------GC-CGG- -5'
22711 5' -59.5 NC_005091.1 + 26422 0.67 0.449944
Target:  5'- gGGGC-UGCcaucguaGCGGCCGggCGcGAgcaGGCCg -3'
miRNA:   3'- -UCCGuAUG-------CGCCGGCuaGC-CUg--CCGG- -5'
22711 5' -59.5 NC_005091.1 + 31853 0.67 0.442412
Target:  5'- cGGCcUGCucgugccguggaaccCGGCCGccUCGGACGGCUc -3'
miRNA:   3'- uCCGuAUGc--------------GCCGGCu-AGCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 22841 0.66 0.499526
Target:  5'- gAGcGCAcGCGCcugaacGCCGcgCuGACGGCCg -3'
miRNA:   3'- -UC-CGUaUGCGc-----CGGCuaGcCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 14188 0.66 0.509536
Target:  5'- cGGCuacUAC-CGGCCGGaaccgcuucgUGGACGGCa -3'
miRNA:   3'- uCCGu--AUGcGCCGGCUa---------GCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 34047 0.66 0.513564
Target:  5'- aAGGCGUACGuCGGCggugcgaacaacaucCaGAUCG-ACGGCg -3'
miRNA:   3'- -UCCGUAUGC-GCCG---------------G-CUAGCcUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 50741 0.66 0.519629
Target:  5'- cGGCGUcgaauaucUGCGGCaCGAgCGGAacgacgaacCGGCCg -3'
miRNA:   3'- uCCGUAu-------GCGCCG-GCUaGCCU---------GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 24880 0.66 0.519629
Target:  5'- cGGCcUGCGCaGCaCGG-CGGAauuccuCGGCCu -3'
miRNA:   3'- uCCGuAUGCGcCG-GCUaGCCU------GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 43120 0.66 0.526741
Target:  5'- gGGGCAa--GUGGCCGAUgacugcuuugaCGaccucacugcggacGACGGCCu -3'
miRNA:   3'- -UCCGUaugCGCCGGCUA-----------GC--------------CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 51375 0.76 0.119072
Target:  5'- cGGCuuucUACGCGGCUGuUCGGAagggGGCCu -3'
miRNA:   3'- uCCGu---AUGCGCCGGCuAGCCUg---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.