miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22711 5' -59.5 NC_005091.1 + 16998 0.66 0.5298
Target:  5'- cGGCGUcuggUGgGGCUGggCGGACGGa- -3'
miRNA:   3'- uCCGUAu---GCgCCGGCuaGCCUGCCgg -5'
22711 5' -59.5 NC_005091.1 + 56974 0.68 0.404969
Target:  5'- aGGGCGUuCGCGGUgaugcucgaaugCGAcgcagagCGGGcCGGCCg -3'
miRNA:   3'- -UCCGUAuGCGCCG------------GCUa------GCCU-GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 11876 0.68 0.39352
Target:  5'- cGGCGa--GCGGCCGAUaCcaacagaugcugaaGGACuGGCCg -3'
miRNA:   3'- uCCGUaugCGCCGGCUA-G--------------CCUG-CCGG- -5'
22711 5' -59.5 NC_005091.1 + 51375 0.76 0.119072
Target:  5'- cGGCuuucUACGCGGCUGuUCGGAagggGGCCu -3'
miRNA:   3'- uCCGu---AUGCGCCGGCuAGCCUg---CCGG- -5'
22711 5' -59.5 NC_005091.1 + 34047 0.66 0.513564
Target:  5'- aAGGCGUACGuCGGCggugcgaacaacaucCaGAUCG-ACGGCg -3'
miRNA:   3'- -UCCGUAUGC-GCCG---------------G-CUAGCcUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 14188 0.66 0.509536
Target:  5'- cGGCuacUAC-CGGCCGGaaccgcuucgUGGACGGCa -3'
miRNA:   3'- uCCGu--AUGcGCCGGCUa---------GCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 26857 0.67 0.479776
Target:  5'- cAGGCGaagACGCGaGCCGGUgCGGcgucGCaGGCg -3'
miRNA:   3'- -UCCGUa--UGCGC-CGGCUA-GCC----UG-CCGg -5'
22711 5' -59.5 NC_005091.1 + 11469 0.67 0.470045
Target:  5'- aAGcGCAgcgugACGCGGCCGAcgccCGGACucaaacagcggaGGUCc -3'
miRNA:   3'- -UC-CGUa----UGCGCCGGCUa---GCCUG------------CCGG- -5'
22711 5' -59.5 NC_005091.1 + 31853 0.67 0.442412
Target:  5'- cGGCcUGCucgugccguggaaccCGGCCGccUCGGACGGCUc -3'
miRNA:   3'- uCCGuAUGc--------------GCCGGCu-AGCCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 21183 0.68 0.404969
Target:  5'- cAGGUAUGCGCGGCgCGAcugcgaguaUCGuGAauGCa -3'
miRNA:   3'- -UCCGUAUGCGCCG-GCU---------AGC-CUgcCGg -5'
22711 5' -59.5 NC_005091.1 + 7202 0.68 0.422074
Target:  5'- cGGCAgauggcgGCGCGuuaccuucgucuuGCCGGcagCGG-CGGCCg -3'
miRNA:   3'- uCCGUa------UGCGC-------------CGGCUa--GCCuGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 26422 0.67 0.449944
Target:  5'- gGGGC-UGCcaucguaGCGGCCGggCGcGAgcaGGCCg -3'
miRNA:   3'- -UCCGuAUG-------CGCCGGCuaGC-CUg--CCGG- -5'
22711 5' -59.5 NC_005091.1 + 43120 0.66 0.526741
Target:  5'- gGGGCAa--GUGGCCGAUgacugcuuugaCGaccucacugcggacGACGGCCu -3'
miRNA:   3'- -UCCGUaugCGCCGGCUA-----------GC--------------CUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 26132 0.68 0.413917
Target:  5'- cAGcGCGUGCGCGGCgagcUGAUCGcGcucgccACGGCg -3'
miRNA:   3'- -UC-CGUAUGCGCCG----GCUAGC-C------UGCCGg -5'
22711 5' -59.5 NC_005091.1 + 24880 0.66 0.519629
Target:  5'- cGGCcUGCGCaGCaCGG-CGGAauuccuCGGCCu -3'
miRNA:   3'- uCCGuAUGCGcCG-GCUaGCCU------GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 37227 0.67 0.460415
Target:  5'- gGGcGCGUACGUGGgCGAUUGGuucaacgagacCGuGCCg -3'
miRNA:   3'- -UC-CGUAUGCGCCgGCUAGCCu----------GC-CGG- -5'
22711 5' -59.5 NC_005091.1 + 56444 0.68 0.413917
Target:  5'- uGGCGUAUGgGGCUucuGGcgGGACGGCa -3'
miRNA:   3'- uCCGUAUGCgCCGG---CUagCCUGCCGg -5'
22711 5' -59.5 NC_005091.1 + 48644 0.68 0.395268
Target:  5'- uGGCuggcGCGCaGGCCcgaugagGAUCgcucgGGGCGGCCg -3'
miRNA:   3'- uCCGua--UGCG-CCGG-------CUAG-----CCUGCCGG- -5'
22711 5' -59.5 NC_005091.1 + 50741 0.66 0.519629
Target:  5'- cGGCGUcgaauaucUGCGGCaCGAgCGGAacgacgaacCGGCCg -3'
miRNA:   3'- uCCGUAu-------GCGCCG-GCUaGCCU---------GCCGG- -5'
22711 5' -59.5 NC_005091.1 + 22841 0.66 0.499526
Target:  5'- gAGcGCAcGCGCcugaacGCCGcgCuGACGGCCg -3'
miRNA:   3'- -UC-CGUaUGCGc-----CGGCuaGcCUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.