miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22713 3' -56.6 NC_005091.1 + 39328 1.1 0.000594
Target:  5'- cAAGUCUGCGUAGCGACACGCAGCGGCg -3'
miRNA:   3'- -UUCAGACGCAUCGCUGUGCGUCGCCG- -5'
22713 3' -56.6 NC_005091.1 + 14330 0.8 0.091301
Target:  5'- cGGGUCgGCGUA-CGACACGCaaGGCGGCu -3'
miRNA:   3'- -UUCAGaCGCAUcGCUGUGCG--UCGCCG- -5'
22713 3' -56.6 NC_005091.1 + 25048 0.74 0.238629
Target:  5'- cGAGaCUGCGagacUGGuCGGCACuGCGGCGGCc -3'
miRNA:   3'- -UUCaGACGC----AUC-GCUGUG-CGUCGCCG- -5'
22713 3' -56.6 NC_005091.1 + 17146 0.71 0.339233
Target:  5'- gAGGUCga-G-AGC-ACGCGCAGCGGCa -3'
miRNA:   3'- -UUCAGacgCaUCGcUGUGCGUCGCCG- -5'
22713 3' -56.6 NC_005091.1 + 23473 0.71 0.364434
Target:  5'- cGGUCUGUucGGCGGCGCuGCGuCGGCu -3'
miRNA:   3'- uUCAGACGcaUCGCUGUG-CGUcGCCG- -5'
22713 3' -56.6 NC_005091.1 + 28251 0.7 0.409227
Target:  5'- uGGUUuccggUGCaaccGGCGACGCGCuGGCGGCu -3'
miRNA:   3'- uUCAG-----ACGca--UCGCUGUGCG-UCGCCG- -5'
22713 3' -56.6 NC_005091.1 + 23319 0.7 0.409227
Target:  5'- uGGUUUGCGaacGCGcCGCGCuaccacAGCGGCa -3'
miRNA:   3'- uUCAGACGCau-CGCuGUGCG------UCGCCG- -5'
22713 3' -56.6 NC_005091.1 + 23518 0.69 0.418589
Target:  5'- -cGUCaucaUGCagaucaUGGCGACGCGC-GCGGCg -3'
miRNA:   3'- uuCAG----ACGc-----AUCGCUGUGCGuCGCCG- -5'
22713 3' -56.6 NC_005091.1 + 5115 0.69 0.447438
Target:  5'- cAGGUgaGCGUcuuAGauuGACACGCGuuGCGGCg -3'
miRNA:   3'- -UUCAgaCGCA---UCg--CUGUGCGU--CGCCG- -5'
22713 3' -56.6 NC_005091.1 + 3451 0.69 0.447438
Target:  5'- ---aUUGCagAGCGACACG-AGCGGCa -3'
miRNA:   3'- uucaGACGcaUCGCUGUGCgUCGCCG- -5'
22713 3' -56.6 NC_005091.1 + 24152 0.69 0.467271
Target:  5'- ---cUUGCGcagaUGGCGAaagAUGCAGCGGCg -3'
miRNA:   3'- uucaGACGC----AUCGCUg--UGCGUCGCCG- -5'
22713 3' -56.6 NC_005091.1 + 51577 0.68 0.477357
Target:  5'- -uGUCgUGCGUcGCGugacggGCGCGCAgaagcGCGGCa -3'
miRNA:   3'- uuCAG-ACGCAuCGC------UGUGCGU-----CGCCG- -5'
22713 3' -56.6 NC_005091.1 + 26400 0.68 0.497842
Target:  5'- cGGUCUGCu--GCGGCAgcCGCAGCcuGCg -3'
miRNA:   3'- uUCAGACGcauCGCUGU--GCGUCGc-CG- -5'
22713 3' -56.6 NC_005091.1 + 17445 0.68 0.518712
Target:  5'- uGGUCUGCGU-GCGGaACuGCA-CGGCg -3'
miRNA:   3'- uUCAGACGCAuCGCUgUG-CGUcGCCG- -5'
22713 3' -56.6 NC_005091.1 + 24112 0.68 0.518712
Target:  5'- cGGUCUGCGUGGCGAucuguuugaaccCAuccacugcCGaCAGCGuGCc -3'
miRNA:   3'- uUCAGACGCAUCGCU------------GU--------GC-GUCGC-CG- -5'
22713 3' -56.6 NC_005091.1 + 6872 0.68 0.529277
Target:  5'- -uGUCUcCGUcGC-ACGCGCAGCGGa -3'
miRNA:   3'- uuCAGAcGCAuCGcUGUGCGUCGCCg -5'
22713 3' -56.6 NC_005091.1 + 21394 0.67 0.549559
Target:  5'- ---cCUGaCG-GGCGGCcucgcguACGCGGCGGCg -3'
miRNA:   3'- uucaGAC-GCaUCGCUG-------UGCGUCGCCG- -5'
22713 3' -56.6 NC_005091.1 + 43230 0.67 0.560331
Target:  5'- -cGUC-GCG-AGUGGCAUGCgaaagaaAGCGGCc -3'
miRNA:   3'- uuCAGaCGCaUCGCUGUGCG-------UCGCCG- -5'
22713 3' -56.6 NC_005091.1 + 55416 0.67 0.561412
Target:  5'- cGGUCUcGCccacuucgAGCGcgaGCACGCGgGCGGCa -3'
miRNA:   3'- uUCAGA-CGca------UCGC---UGUGCGU-CGCCG- -5'
22713 3' -56.6 NC_005091.1 + 52223 0.67 0.583131
Target:  5'- cGGUagUGCGgGGCGGCuuUGaCAGCGGCu -3'
miRNA:   3'- uUCAg-ACGCaUCGCUGu-GC-GUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.