miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22713 5' -51.5 NC_005091.1 + 44200 0.66 0.894964
Target:  5'- -cGACAGUGCc-GUAUGCG--GCGUc -3'
miRNA:   3'- cuCUGUCACGaaCAUACGCuuCGCGc -5'
22713 5' -51.5 NC_005091.1 + 9236 0.71 0.612345
Target:  5'- -cGGCGGUGCggcccUGCGAAGgGCGa -3'
miRNA:   3'- cuCUGUCACGaacauACGCUUCgCGC- -5'
22713 5' -51.5 NC_005091.1 + 20007 0.74 0.438788
Target:  5'- cGGGCAGccuuucgUGUAUGCGAGGCGCa -3'
miRNA:   3'- cUCUGUCacga---ACAUACGCUUCGCGc -5'
22713 5' -51.5 NC_005091.1 + 39362 1.1 0.001886
Target:  5'- cGAGACAGUGCUUGUAUGCGAAGCGCGa -3'
miRNA:   3'- -CUCUGUCACGAACAUACGCUUCGCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.