Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22714 | 5' | -49.5 | NC_005091.1 | + | 49280 | 0.66 | 0.971849 |
Target: 5'- ---gGGGAGaAGCcgCACGUCA-UCCg -3' miRNA: 3'- cuagCCCUCaUUGaaGUGCAGUcAGG- -5' |
|||||||
22714 | 5' | -49.5 | NC_005091.1 | + | 19504 | 0.66 | 0.957418 |
Target: 5'- --gCGGGaAGUugaaauccccgAACUUCGCGg-GGUCCg -3' miRNA: 3'- cuaGCCC-UCA-----------UUGAAGUGCagUCAGG- -5' |
|||||||
22714 | 5' | -49.5 | NC_005091.1 | + | 32820 | 0.67 | 0.938607 |
Target: 5'- cAUCGGG-GUAgucGCgaugCACGUCGauauGUCCg -3' miRNA: 3'- cUAGCCCuCAU---UGaa--GUGCAGU----CAGG- -5' |
|||||||
22714 | 5' | -49.5 | NC_005091.1 | + | 39852 | 1.13 | 0.002725 |
Target: 5'- gGAUCGGGAGUAACUUCACGUCAGUCCu -3' miRNA: 3'- -CUAGCCCUCAUUGAAGUGCAGUCAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home