miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22715 3' -54.3 NC_005091.1 + 9624 0.66 0.780014
Target:  5'- ----aCGgCAGCCucgucacggGUGCGggCACGACg -3'
miRNA:   3'- guuagGCgGUCGG---------UACGCuaGUGCUG- -5'
22715 3' -54.3 NC_005091.1 + 16038 0.66 0.780014
Target:  5'- ---gCCGCCGGCCG-GCGG-CACa-- -3'
miRNA:   3'- guuaGGCGGUCGGUaCGCUaGUGcug -5'
22715 3' -54.3 NC_005091.1 + 5315 0.66 0.780014
Target:  5'- ---gCgGCCAGUgAUGUGAUCcgggGCGGCc -3'
miRNA:   3'- guuaGgCGGUCGgUACGCUAG----UGCUG- -5'
22715 3' -54.3 NC_005091.1 + 46844 0.66 0.780014
Target:  5'- aCGGUUgagCGCCAGCUucucgGCGGUCguguccgggACGACg -3'
miRNA:   3'- -GUUAG---GCGGUCGGua---CGCUAG---------UGCUG- -5'
22715 3' -54.3 NC_005091.1 + 47076 0.66 0.770885
Target:  5'- uGAUCCauGCCAGCCAgucgaugaagaugccGCGcUCGCGGu -3'
miRNA:   3'- gUUAGG--CGGUCGGUa--------------CGCuAGUGCUg -5'
22715 3' -54.3 NC_005091.1 + 39580 0.66 0.749138
Target:  5'- aCGAUCCGaUCgAGCugCAUGCGuAUCAgGACa -3'
miRNA:   3'- -GUUAGGC-GG-UCG--GUACGC-UAGUgCUG- -5'
22715 3' -54.3 NC_005091.1 + 32510 0.66 0.749138
Target:  5'- -cGUCUGCCcgguacgucugAGCC-UGCGuAUCGCGAa -3'
miRNA:   3'- guUAGGCGG-----------UCGGuACGC-UAGUGCUg -5'
22715 3' -54.3 NC_005091.1 + 48558 0.66 0.742821
Target:  5'- gCGAUCCucaucgggccugcgcGCCAGCCA-GUGA-CACGGa -3'
miRNA:   3'- -GUUAGG---------------CGGUCGGUaCGCUaGUGCUg -5'
22715 3' -54.3 NC_005091.1 + 22746 0.66 0.738586
Target:  5'- ---gCCGCCGGCCGU-Cag-CGCGGCg -3'
miRNA:   3'- guuaGGCGGUCGGUAcGcuaGUGCUG- -5'
22715 3' -54.3 NC_005091.1 + 24400 0.66 0.738586
Target:  5'- aCGGUCgacgGCCAGCCuaucgccGCGAUCAaGGCg -3'
miRNA:   3'- -GUUAGg---CGGUCGGua-----CGCUAGUgCUG- -5'
22715 3' -54.3 NC_005091.1 + 48701 0.66 0.738586
Target:  5'- ---aCgGCCGGCCaAUGCGGcacugCACGAg -3'
miRNA:   3'- guuaGgCGGUCGG-UACGCUa----GUGCUg -5'
22715 3' -54.3 NC_005091.1 + 9370 0.67 0.706324
Target:  5'- ---aCgGCCAGCCGgucgGCGGccaGCGGCg -3'
miRNA:   3'- guuaGgCGGUCGGUa---CGCUag-UGCUG- -5'
22715 3' -54.3 NC_005091.1 + 39329 0.67 0.706324
Target:  5'- aAGUCUGCguagcgacacgCAGCgGcGCGAUCACGAg -3'
miRNA:   3'- gUUAGGCG-----------GUCGgUaCGCUAGUGCUg -5'
22715 3' -54.3 NC_005091.1 + 17917 0.67 0.684425
Target:  5'- aUAcgUCGCCucGGUCGUGCGGUagacggccggCGCGACg -3'
miRNA:   3'- -GUuaGGCGG--UCGGUACGCUA----------GUGCUG- -5'
22715 3' -54.3 NC_005091.1 + 40874 0.68 0.662321
Target:  5'- aCGGUCuCGCCGGaugCGUGCGcagCGCGAUc -3'
miRNA:   3'- -GUUAG-GCGGUCg--GUACGCua-GUGCUG- -5'
22715 3' -54.3 NC_005091.1 + 19777 0.68 0.651221
Target:  5'- uCGAUCCGCagcGCCcaugagcgugAUGCGAUUGcCGACg -3'
miRNA:   3'- -GUUAGGCGgu-CGG----------UACGCUAGU-GCUG- -5'
22715 3' -54.3 NC_005091.1 + 19409 0.68 0.628977
Target:  5'- --uUCaaaGCCGGCaUGUGCGAgCGCGGCg -3'
miRNA:   3'- guuAGg--CGGUCG-GUACGCUaGUGCUG- -5'
22715 3' -54.3 NC_005091.1 + 9427 0.69 0.606743
Target:  5'- ---gCUGCCGGCCucGCGAUgugcCACGACc -3'
miRNA:   3'- guuaGGCGGUCGGuaCGCUA----GUGCUG- -5'
22715 3' -54.3 NC_005091.1 + 24565 0.69 0.595656
Target:  5'- -uAUCgGUCAGCgGUGuCGAUCGgGGCg -3'
miRNA:   3'- guUAGgCGGUCGgUAC-GCUAGUgCUG- -5'
22715 3' -54.3 NC_005091.1 + 22965 0.69 0.573584
Target:  5'- uGAUCC-CCAauGCUuggcGUGCGGUUACGGCg -3'
miRNA:   3'- gUUAGGcGGU--CGG----UACGCUAGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.