Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22715 | 3' | -54.3 | NC_005091.1 | + | 3233 | 0.7 | 0.498279 |
Target: 5'- ---gCCGCCGGCCGcuCGAUCgAUGACu -3' miRNA: 3'- guuaGGCGGUCGGUacGCUAG-UGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 5315 | 0.66 | 0.780014 |
Target: 5'- ---gCgGCCAGUgAUGUGAUCcgggGCGGCc -3' miRNA: 3'- guuaGgCGGUCGgUACGCUAG----UGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 7612 | 0.7 | 0.540864 |
Target: 5'- --uUCCGCCGuGCCGaccgGCGAUU-CGACa -3' miRNA: 3'- guuAGGCGGU-CGGUa---CGCUAGuGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 9370 | 0.67 | 0.706324 |
Target: 5'- ---aCgGCCAGCCGgucgGCGGccaGCGGCg -3' miRNA: 3'- guuaGgCGGUCGGUa---CGCUag-UGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 9427 | 0.69 | 0.606743 |
Target: 5'- ---gCUGCCGGCCucGCGAUgugcCACGACc -3' miRNA: 3'- guuaGGCGGUCGGuaCGCUA----GUGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 9624 | 0.66 | 0.780014 |
Target: 5'- ----aCGgCAGCCucgucacggGUGCGggCACGACg -3' miRNA: 3'- guuagGCgGUCGG---------UACGCuaGUGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 16038 | 0.66 | 0.780014 |
Target: 5'- ---gCCGCCGGCCG-GCGG-CACa-- -3' miRNA: 3'- guuaGGCGGUCGGUaCGCUaGUGcug -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 16111 | 0.77 | 0.212819 |
Target: 5'- ---gCCGCCGGCCG-GCGGcagCACGACg -3' miRNA: 3'- guuaGGCGGUCGGUaCGCUa--GUGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 16237 | 0.76 | 0.256005 |
Target: 5'- aCGAggCCGCCGG-CAUGCGAugcgccgcUCGCGACg -3' miRNA: 3'- -GUUa-GGCGGUCgGUACGCU--------AGUGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 17917 | 0.67 | 0.684425 |
Target: 5'- aUAcgUCGCCucGGUCGUGCGGUagacggccggCGCGACg -3' miRNA: 3'- -GUuaGGCGG--UCGGUACGCUA----------GUGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 19409 | 0.68 | 0.628977 |
Target: 5'- --uUCaaaGCCGGCaUGUGCGAgCGCGGCg -3' miRNA: 3'- guuAGg--CGGUCG-GUACGCUaGUGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 19777 | 0.68 | 0.651221 |
Target: 5'- uCGAUCCGCagcGCCcaugagcgugAUGCGAUUGcCGACg -3' miRNA: 3'- -GUUAGGCGgu-CGG----------UACGCUAGU-GCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 22746 | 0.66 | 0.738586 |
Target: 5'- ---gCCGCCGGCCGU-Cag-CGCGGCg -3' miRNA: 3'- guuaGGCGGUCGGUAcGcuaGUGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 22904 | 0.72 | 0.399325 |
Target: 5'- gUAcgCCGCCGGaCCAUuCGGUCGCGGa -3' miRNA: 3'- -GUuaGGCGGUC-GGUAcGCUAGUGCUg -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 22965 | 0.69 | 0.573584 |
Target: 5'- uGAUCC-CCAauGCUuggcGUGCGGUUACGGCg -3' miRNA: 3'- gUUAGGcGGU--CGG----UACGCUAGUGCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 24400 | 0.66 | 0.738586 |
Target: 5'- aCGGUCgacgGCCAGCCuaucgccGCGAUCAaGGCg -3' miRNA: 3'- -GUUAGg---CGGUCGGua-----CGCUAGUgCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 24565 | 0.69 | 0.595656 |
Target: 5'- -uAUCgGUCAGCgGUGuCGAUCGgGGCg -3' miRNA: 3'- guUAGgCGGUCGgUAC-GCUAGUgCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 25012 | 0.69 | 0.572485 |
Target: 5'- cCGAUCUGCCAucCCGUgaacgcaGCGGUCAgGACg -3' miRNA: 3'- -GUUAGGCGGUc-GGUA-------CGCUAGUgCUG- -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 32510 | 0.66 | 0.749138 |
Target: 5'- -cGUCUGCCcgguacgucugAGCC-UGCGuAUCGCGAa -3' miRNA: 3'- guUAGGCGG-----------UCGGuACGC-UAGUGCUg -5' |
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22715 | 3' | -54.3 | NC_005091.1 | + | 34878 | 0.7 | 0.530091 |
Target: 5'- aAGUCCGCCGccGCCAaGCGAagC-CGACu -3' miRNA: 3'- gUUAGGCGGU--CGGUaCGCUa-GuGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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