miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22716 5' -54.6 NC_005091.1 + 50821 0.68 0.640688
Target:  5'- aUCaAGCGUGCGGC-CGUCGUgCGCGCGg -3'
miRNA:   3'- aAG-UCGUGUGCUGcGCAGUA-GUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 20340 0.68 0.62961
Target:  5'- --aAGCG-GCGACGCGUCGgccgauucgaUCACGCu -3'
miRNA:   3'- aagUCGUgUGCUGCGCAGU----------AGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 54251 0.68 0.618535
Target:  5'- -gUAGCACgACGggcaaaACGCGUUgccgAUCGCGCGg -3'
miRNA:   3'- aaGUCGUG-UGC------UGCGCAG----UAGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 11820 0.68 0.607471
Target:  5'- cUUCGGCugACGGacuuCGCGgagAUCGCGCa -3'
miRNA:   3'- -AAGUCGugUGCU----GCGCag-UAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 17478 0.68 0.607471
Target:  5'- -gCAGCGC-CGACGagcacaaucgaGaUCGUCGCGCGg -3'
miRNA:   3'- aaGUCGUGuGCUGCg----------C-AGUAGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 31839 0.69 0.552656
Target:  5'- -gCAGC-CACGuucgccCGCGUCGUCACGa- -3'
miRNA:   3'- aaGUCGuGUGCu-----GCGCAGUAGUGCgc -5'
22716 5' -54.6 NC_005091.1 + 49271 0.69 0.552656
Target:  5'- -gCAGcCACACGAgGCGcaguUCGUCGgGCGu -3'
miRNA:   3'- aaGUC-GUGUGCUgCGC----AGUAGUgCGC- -5'
22716 5' -54.6 NC_005091.1 + 39363 0.7 0.53112
Target:  5'- -gCAGCACACGGCGUacaugucccauGUCcugAUCcGCGCGg -3'
miRNA:   3'- aaGUCGUGUGCUGCG-----------CAG---UAG-UGCGC- -5'
22716 5' -54.6 NC_005091.1 + 51884 0.7 0.499417
Target:  5'- aUCGGCAaACGACGC-UCGUCguaacccaucagGCGCGg -3'
miRNA:   3'- aAGUCGUgUGCUGCGcAGUAG------------UGCGC- -5'
22716 5' -54.6 NC_005091.1 + 16246 0.7 0.499417
Target:  5'- -cCGGCAUGCGAUGCGcCGcUCGCGaCGa -3'
miRNA:   3'- aaGUCGUGUGCUGCGCaGU-AGUGC-GC- -5'
22716 5' -54.6 NC_005091.1 + 1988 0.7 0.499417
Target:  5'- -aCAcGCACACGACGCuGUCGcggccaugCugGCGa -3'
miRNA:   3'- aaGU-CGUGUGCUGCG-CAGUa-------GugCGC- -5'
22716 5' -54.6 NC_005091.1 + 36966 0.71 0.438754
Target:  5'- aUCGGCGCgaugAUGGCGCG-C-UCGCGCGa -3'
miRNA:   3'- aAGUCGUG----UGCUGCGCaGuAGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 36453 0.72 0.419482
Target:  5'- aUCGGCGCACGAUacaGCGUCG-C-CGCa -3'
miRNA:   3'- aAGUCGUGUGCUG---CGCAGUaGuGCGc -5'
22716 5' -54.6 NC_005091.1 + 5086 0.72 0.419482
Target:  5'- -gCGGCGCAgGACGCGaUCGaaugcuUCGCGCu -3'
miRNA:   3'- aaGUCGUGUgCUGCGC-AGU------AGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 36874 0.72 0.400732
Target:  5'- gUCGGUgucGCGCGAgCGCGccaUCAUCGCGCc -3'
miRNA:   3'- aAGUCG---UGUGCU-GCGC---AGUAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 52131 0.75 0.285306
Target:  5'- --aAGCGCGCGGCGCG-UAUCuCGCGa -3'
miRNA:   3'- aagUCGUGUGCUGCGCaGUAGuGCGC- -5'
22716 5' -54.6 NC_005091.1 + 3124 0.75 0.257536
Target:  5'- gUCAGCACGCGAauCGCGUUcUCGCucuGCGg -3'
miRNA:   3'- aAGUCGUGUGCU--GCGCAGuAGUG---CGC- -5'
22716 5' -54.6 NC_005091.1 + 41691 1.06 0.002068
Target:  5'- cUUCAGCACACGACGCGUCAUCACGCGc -3'
miRNA:   3'- -AAGUCGUGUGCUGCGCAGUAGUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.