miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22717 3' -52.4 NC_005091.1 + 32422 0.66 0.878552
Target:  5'- -cCGcCGAACGccguGCUGcuaucaaggccGACCGCGAGCGc -3'
miRNA:   3'- caGU-GCUUGCu---UGAC-----------CUGGCGUUCGU- -5'
22717 3' -52.4 NC_005091.1 + 5528 0.66 0.878552
Target:  5'- -gCGCGAACGu-CUGcauguCCGUAAGCAa -3'
miRNA:   3'- caGUGCUUGCuuGACcu---GGCGUUCGU- -5'
22717 3' -52.4 NC_005091.1 + 37608 0.66 0.853941
Target:  5'- cUCAUGGuCGAuucGgUGGACCGcCAAGCc -3'
miRNA:   3'- cAGUGCUuGCU---UgACCUGGC-GUUCGu -5'
22717 3' -52.4 NC_005091.1 + 31778 0.67 0.827156
Target:  5'- -cCACGGcACGAGCaGGccGCCGaCGAGCGc -3'
miRNA:   3'- caGUGCU-UGCUUGaCC--UGGC-GUUCGU- -5'
22717 3' -52.4 NC_005091.1 + 26633 0.67 0.827156
Target:  5'- cGUCGCGAagGCGggUcaGGAUgUGCAGGCGg -3'
miRNA:   3'- -CAGUGCU--UGCuuGa-CCUG-GCGUUCGU- -5'
22717 3' -52.4 NC_005091.1 + 16057 0.67 0.797466
Target:  5'- aUCGCaGAGCGAcaagcaggucaucGCgUGGaacGCCGCGAGCGc -3'
miRNA:   3'- cAGUG-CUUGCU-------------UG-ACC---UGGCGUUCGU- -5'
22717 3' -52.4 NC_005091.1 + 13097 0.67 0.792506
Target:  5'- gGUCugGAuCGAcaucuacgagccgugGCUGG-CgGCAGGCAa -3'
miRNA:   3'- -CAGugCUuGCU---------------UGACCuGgCGUUCGU- -5'
22717 3' -52.4 NC_005091.1 + 42284 0.67 0.788507
Target:  5'- -aCGCGGAgGAAUcGGAaccgCGCAGGCAg -3'
miRNA:   3'- caGUGCUUgCUUGaCCUg---GCGUUCGU- -5'
22717 3' -52.4 NC_005091.1 + 50359 0.67 0.788507
Target:  5'- cGUCuugcuuuCGAACGcGC-GGGCCGcCAAGCGu -3'
miRNA:   3'- -CAGu------GCUUGCuUGaCCUGGC-GUUCGU- -5'
22717 3' -52.4 NC_005091.1 + 23342 0.68 0.778393
Target:  5'- uGUCGCGcagugcgucGGCGAGCUGGuuugcgaacgcGCCGCGcuaccacagcGGCAc -3'
miRNA:   3'- -CAGUGC---------UUGCUUGACC-----------UGGCGU----------UCGU- -5'
22717 3' -52.4 NC_005091.1 + 36680 0.68 0.778393
Target:  5'- aUCGCGAACGAACcgaacgucgUGGuCCGCuucgacGCGa -3'
miRNA:   3'- cAGUGCUUGCUUG---------ACCuGGCGuu----CGU- -5'
22717 3' -52.4 NC_005091.1 + 52937 0.68 0.768121
Target:  5'- aGUCACG-GCGAACgaa--CGCGAGCAg -3'
miRNA:   3'- -CAGUGCuUGCUUGaccugGCGUUCGU- -5'
22717 3' -52.4 NC_005091.1 + 45904 0.68 0.768121
Target:  5'- -aCGCG-ACGAACUGcuGGCCGUucGCGa -3'
miRNA:   3'- caGUGCuUGCUUGAC--CUGGCGuuCGU- -5'
22717 3' -52.4 NC_005091.1 + 18239 0.68 0.757703
Target:  5'- cUCACGcuCGAucGCcGGGCCGCgAAGCu -3'
miRNA:   3'- cAGUGCuuGCU--UGaCCUGGCG-UUCGu -5'
22717 3' -52.4 NC_005091.1 + 55899 0.68 0.751387
Target:  5'- -gCACGAugGcgcagcaggccgaccAACUGcGugCGCAGGCGg -3'
miRNA:   3'- caGUGCUugC---------------UUGAC-CugGCGUUCGU- -5'
22717 3' -52.4 NC_005091.1 + 55658 0.68 0.736478
Target:  5'- -gCACGAGCGcg-UGGACCGCGcugaauucgacGGCGu -3'
miRNA:   3'- caGUGCUUGCuugACCUGGCGU-----------UCGU- -5'
22717 3' -52.4 NC_005091.1 + 35411 0.69 0.725695
Target:  5'- cGUCGCcccCGAGCUGGGCCGaaGAGUg -3'
miRNA:   3'- -CAGUGcuuGCUUGACCUGGCg-UUCGu -5'
22717 3' -52.4 NC_005091.1 + 38833 0.69 0.714816
Target:  5'- cUCGCGAACGuacaAGCUGcGGCCGgGAuGCGa -3'
miRNA:   3'- cAGUGCUUGC----UUGAC-CUGGCgUU-CGU- -5'
22717 3' -52.4 NC_005091.1 + 29619 0.69 0.681716
Target:  5'- --uGCGGGCGAGCgggaGGGCCGUAcGCu -3'
miRNA:   3'- cagUGCUUGCUUGa---CCUGGCGUuCGu -5'
22717 3' -52.4 NC_005091.1 + 46258 0.7 0.670568
Target:  5'- -aCGCGAAgGAGCUGGACgCG-AAGUg -3'
miRNA:   3'- caGUGCUUgCUUGACCUG-GCgUUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.