miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22717 5' -50.5 NC_005091.1 + 39604 0.66 0.916942
Target:  5'- gUACGCgccgUGUCGAcgcaucucgucguGCUUGUUGUaCUGg -3'
miRNA:   3'- -AUGCGa---ACGGCU-------------UGAACAACAgGACg -5'
22717 5' -50.5 NC_005091.1 + 35998 0.66 0.906938
Target:  5'- gGCGCaaUGCCGAACacGUUGcagacccacauguucUUCUGCa -3'
miRNA:   3'- aUGCGa-ACGGCUUGaaCAAC---------------AGGACG- -5'
22717 5' -50.5 NC_005091.1 + 10148 0.67 0.89773
Target:  5'- cACGC--GCCGAGCgccgcacguuccugaUGUgcgcgUGUCCUGCc -3'
miRNA:   3'- aUGCGaaCGGCUUGa--------------ACA-----ACAGGACG- -5'
22717 5' -50.5 NC_005091.1 + 36169 0.67 0.897001
Target:  5'- gGCGCgcGCCGAA------GUCCUGCg -3'
miRNA:   3'- aUGCGaaCGGCUUgaacaaCAGGACG- -5'
22717 5' -50.5 NC_005091.1 + 1077 0.67 0.889554
Target:  5'- aGCGCgcccgcGUCGAGCag---GUCCUGCg -3'
miRNA:   3'- aUGCGaa----CGGCUUGaacaaCAGGACG- -5'
22717 5' -50.5 NC_005091.1 + 52444 0.67 0.873813
Target:  5'- cGCGCUUGUCGucauCUcgauuccGUCCUGCu -3'
miRNA:   3'- aUGCGAACGGCuu--GAacaa---CAGGACG- -5'
22717 5' -50.5 NC_005091.1 + 41253 0.67 0.873813
Target:  5'- cGCGCgcaucUGCCGAACgaGUUccagCUUGCg -3'
miRNA:   3'- aUGCGa----ACGGCUUGaaCAAca--GGACG- -5'
22717 5' -50.5 NC_005091.1 + 24758 0.67 0.865531
Target:  5'- gAUGCccUGCCGAGC----UGUUCUGCg -3'
miRNA:   3'- aUGCGa-ACGGCUUGaacaACAGGACG- -5'
22717 5' -50.5 NC_005091.1 + 21995 0.73 0.567335
Target:  5'- gACGCggGUCGAGaaUGaUGUCCUGCu -3'
miRNA:   3'- aUGCGaaCGGCUUgaACaACAGGACG- -5'
22717 5' -50.5 NC_005091.1 + 36856 0.79 0.295188
Target:  5'- -gUGCUUGUCGAACUUGUUGUCg-GUg -3'
miRNA:   3'- auGCGAACGGCUUGAACAACAGgaCG- -5'
22717 5' -50.5 NC_005091.1 + 42477 1.1 0.002377
Target:  5'- aUACGCUUGCCGAACUUGUUGUCCUGCc -3'
miRNA:   3'- -AUGCGAACGGCUUGAACAACAGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.