miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22718 3' -58.6 NC_005091.1 + 6259 0.66 0.519949
Target:  5'- gGUUGGCCGggUGCUguuucucccaCUGGCUUCUgCCCu -3'
miRNA:   3'- -UAGCCGGUgaACGG----------GGUCGAAGA-GGG- -5'
22718 3' -58.6 NC_005091.1 + 34158 0.66 0.509583
Target:  5'- -gCGGCCGCUaucgaGUCCgAGCUgccgCCCg -3'
miRNA:   3'- uaGCCGGUGAa----CGGGgUCGAaga-GGG- -5'
22718 3' -58.6 NC_005091.1 + 30497 0.66 0.499306
Target:  5'- cAUCGGCCg---GCCCUucggggcuGGCUUCUCa- -3'
miRNA:   3'- -UAGCCGGugaaCGGGG--------UCGAAGAGgg -5'
22718 3' -58.6 NC_005091.1 + 44797 0.67 0.479036
Target:  5'- uUCGGCCGcCUUGCCgCCGcccguaccGCcugCUUCCg -3'
miRNA:   3'- uAGCCGGU-GAACGG-GGU--------CGaa-GAGGG- -5'
22718 3' -58.6 NC_005091.1 + 9952 0.67 0.469052
Target:  5'- -cCGGCagUAUUacgGCCCCGGCUcgaUCCCg -3'
miRNA:   3'- uaGCCG--GUGAa--CGGGGUCGAag-AGGG- -5'
22718 3' -58.6 NC_005091.1 + 23466 0.67 0.469052
Target:  5'- uUCGGCggCGCUgcgucggcUGCCCCGGCUg--CCg -3'
miRNA:   3'- uAGCCG--GUGA--------ACGGGGUCGAagaGGg -5'
22718 3' -58.6 NC_005091.1 + 24954 0.67 0.443611
Target:  5'- uUCGGCCGCcgcagUGCCgaCCAGUcucgcagucucgaacUUCUCgCCg -3'
miRNA:   3'- uAGCCGGUGa----ACGG--GGUCG---------------AAGAG-GG- -5'
22718 3' -58.6 NC_005091.1 + 37765 0.68 0.411549
Target:  5'- cUCGGCCACUuuguagaucgggUGUCCuUGGCgcUUCCCg -3'
miRNA:   3'- uAGCCGGUGA------------ACGGG-GUCGaaGAGGG- -5'
22718 3' -58.6 NC_005091.1 + 6931 0.68 0.402396
Target:  5'- -aCaGCCAUUUcguacgGCCCCAGCUUUUCgCu -3'
miRNA:   3'- uaGcCGGUGAA------CGGGGUCGAAGAGgG- -5'
22718 3' -58.6 NC_005091.1 + 44721 0.7 0.303137
Target:  5'- cGUCGGCCGagUGCUUCGGCUUCguugcugCCUu -3'
miRNA:   3'- -UAGCCGGUgaACGGGGUCGAAGa------GGG- -5'
22718 3' -58.6 NC_005091.1 + 26343 0.72 0.235696
Target:  5'- -cCGGCCGCUacgauggcaGCCCCGGCgg--CCCg -3'
miRNA:   3'- uaGCCGGUGAa--------CGGGGUCGaagaGGG- -5'
22718 3' -58.6 NC_005091.1 + 45708 0.74 0.158503
Target:  5'- cGUCGGCCGCgcGCCgcgCCGGCUacugcUCUUCCg -3'
miRNA:   3'- -UAGCCGGUGaaCGG---GGUCGA-----AGAGGG- -5'
22718 3' -58.6 NC_005091.1 + 43046 1.1 0.000359
Target:  5'- cAUCGGCCACUUGCCCCAGCUUCUCCCg -3'
miRNA:   3'- -UAGCCGGUGAACGGGGUCGAAGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.