miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22718 5' -56.5 NC_005091.1 + 55477 0.66 0.691889
Target:  5'- aGCGugGcc-GCCAugacuuccuuGGUCGCCUcguUGCCa -3'
miRNA:   3'- -CGCugUccuCGGUu---------CCAGCGGA---ACGG- -5'
22718 5' -56.5 NC_005091.1 + 26408 0.66 0.691889
Target:  5'- uGCGGCAGccgcAGCCugcGUUGCCUgcGCCu -3'
miRNA:   3'- -CGCUGUCc---UCGGuucCAGCGGAa-CGG- -5'
22718 5' -56.5 NC_005091.1 + 10907 0.66 0.681147
Target:  5'- cGCGuACGGGucgucgcuGCCGAGuGcaaugcgCGCCUUGgCCg -3'
miRNA:   3'- -CGC-UGUCCu-------CGGUUC-Ca------GCGGAAC-GG- -5'
22718 5' -56.5 NC_005091.1 + 50374 0.66 0.681147
Target:  5'- cGCG-CGGGccGCCAAGcGUCGCgCgaUGCUg -3'
miRNA:   3'- -CGCuGUCCu-CGGUUC-CAGCG-Ga-ACGG- -5'
22718 5' -56.5 NC_005091.1 + 28981 0.66 0.67036
Target:  5'- aCGGCAGGGG-CAGGcGUCuCCgcGCCg -3'
miRNA:   3'- cGCUGUCCUCgGUUC-CAGcGGaaCGG- -5'
22718 5' -56.5 NC_005091.1 + 16873 0.66 0.67036
Target:  5'- aGCuGCAGcGAGCCGuucguGGUCGUCccccaGCCc -3'
miRNA:   3'- -CGcUGUC-CUCGGUu----CCAGCGGaa---CGG- -5'
22718 5' -56.5 NC_005091.1 + 23419 0.67 0.626961
Target:  5'- cGgGACGuGGGGCCuuGG-CGCUUccgUGCCu -3'
miRNA:   3'- -CgCUGU-CCUCGGuuCCaGCGGA---ACGG- -5'
22718 5' -56.5 NC_005091.1 + 24320 0.67 0.616098
Target:  5'- gGCGAUAGGcuGGCC---GUCGaCCgucgUGCCg -3'
miRNA:   3'- -CGCUGUCC--UCGGuucCAGC-GGa---ACGG- -5'
22718 5' -56.5 NC_005091.1 + 34288 0.67 0.605249
Target:  5'- aUGuCcGGGGCCAucugguacAGGUCGCCggggUGCg -3'
miRNA:   3'- cGCuGuCCUCGGU--------UCCAGCGGa---ACGg -5'
22718 5' -56.5 NC_005091.1 + 54861 0.67 0.600916
Target:  5'- uGCGgaaAGGGGCUAGGcaagguuuaacuuuGUCGCCUagaaucucagucaUGCCg -3'
miRNA:   3'- -CGCug-UCCUCGGUUC--------------CAGCGGA-------------ACGG- -5'
22718 5' -56.5 NC_005091.1 + 12950 0.67 0.594423
Target:  5'- uGCGcuacauCAGGuugugGGCCAcGGUCGuCCggGCCg -3'
miRNA:   3'- -CGCu-----GUCC-----UCGGUuCCAGC-GGaaCGG- -5'
22718 5' -56.5 NC_005091.1 + 14486 0.67 0.594423
Target:  5'- cGUGACAGGGcuGCUGAacgucGGUgCGCCgguaagcgUGCCg -3'
miRNA:   3'- -CGCUGUCCU--CGGUU-----CCA-GCGGa-------ACGG- -5'
22718 5' -56.5 NC_005091.1 + 25848 0.68 0.550447
Target:  5'- cGCGGCGagaucaucaauccGGAuGCCGAGGcguUCGgCUUGCg -3'
miRNA:   3'- -CGCUGU-------------CCU-CGGUUCC---AGCgGAACGg -5'
22718 5' -56.5 NC_005091.1 + 30251 0.68 0.530395
Target:  5'- gGCGACAa-GGCCGGGG-CGUCgaaGCCg -3'
miRNA:   3'- -CGCUGUccUCGGUUCCaGCGGaa-CGG- -5'
22718 5' -56.5 NC_005091.1 + 11001 0.69 0.508551
Target:  5'- cCGACGGGuuuccGCCGGGGcuucuuuUUGCCUacagGCCg -3'
miRNA:   3'- cGCUGUCCu----CGGUUCC-------AGCGGAa---CGG- -5'
22718 5' -56.5 NC_005091.1 + 8014 0.69 0.479036
Target:  5'- cGCGAgGGGA-UCGAGGUCGgCCU-GCa -3'
miRNA:   3'- -CGCUgUCCUcGGUUCCAGC-GGAaCGg -5'
22718 5' -56.5 NC_005091.1 + 14114 0.69 0.459177
Target:  5'- cCGGCcGGuaguAGCCGggAGGUCGCCggGCUg -3'
miRNA:   3'- cGCUGuCC----UCGGU--UCCAGCGGaaCGG- -5'
22718 5' -56.5 NC_005091.1 + 44613 0.7 0.430237
Target:  5'- cCGGCuugaucGAGgCGAGGUCuucgGCCUUGCCg -3'
miRNA:   3'- cGCUGuc----CUCgGUUCCAG----CGGAACGG- -5'
22718 5' -56.5 NC_005091.1 + 1960 0.7 0.402396
Target:  5'- uGCGGCAaaguucgucuuGGAacggGCCGAGGUCGcCCUUGa- -3'
miRNA:   3'- -CGCUGU-----------CCU----CGGUUCCAGC-GGAACgg -5'
22718 5' -56.5 NC_005091.1 + 11094 0.71 0.393373
Target:  5'- -gGACGGGAGUCGGGaUCGCUuUUGCUu -3'
miRNA:   3'- cgCUGUCCUCGGUUCcAGCGG-AACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.