Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
22718 | 5' | -56.5 | NC_005091.1 | + | 11094 | 0.71 | 0.393373 |
Target: 5'- -gGACGGGAGUCGGGaUCGCUuUUGCUu -3' miRNA: 3'- cgCUGUCCUCGGUUCcAGCGG-AACGG- -5' |
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22718 | 5' | -56.5 | NC_005091.1 | + | 46540 | 0.72 | 0.317517 |
Target: 5'- cGCGACGGcuuGUCGAGcGUCGCCUUcuugaucGCCu -3' miRNA: 3'- -CGCUGUCcu-CGGUUC-CAGCGGAA-------CGG- -5' |
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22718 | 5' | -56.5 | NC_005091.1 | + | 56492 | 0.75 | 0.201589 |
Target: 5'- ----gGGGAGCCGAGcGUUgaGCCUUGCCa -3' miRNA: 3'- cgcugUCCUCGGUUC-CAG--CGGAACGG- -5' |
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22718 | 5' | -56.5 | NC_005091.1 | + | 25632 | 0.75 | 0.223819 |
Target: 5'- uGCGGCGGGcAGCCGA--UCGCCgagcugGCCg -3' miRNA: 3'- -CGCUGUCC-UCGGUUccAGCGGaa----CGG- -5' |
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22718 | 5' | -56.5 | NC_005091.1 | + | 2313 | 0.77 | 0.162845 |
Target: 5'- cGCGACGac-GCCgAAGGUCGCCUgaaUGCCa -3' miRNA: 3'- -CGCUGUccuCGG-UUCCAGCGGA---ACGG- -5' |
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22718 | 5' | -56.5 | NC_005091.1 | + | 11010 | 0.77 | 0.158503 |
Target: 5'- cCGGCuuc-GCCGGGGUCGCUUUGCCg -3' miRNA: 3'- cGCUGuccuCGGUUCCAGCGGAACGG- -5' |
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22718 | 5' | -56.5 | NC_005091.1 | + | 43080 | 1.12 | 0.000469 |
Target: 5'- uGCGACAGGAGCCAAGGUCGCCUUGCCc -3' miRNA: 3'- -CGCUGUCCUCGGUUCCAGCGGAACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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