miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2272 3' -55.9 NC_001405.1 + 1436 0.66 0.583817
Target:  5'- uGCCGuGaGAGUU--GGUGGgCGUCGCCa -3'
miRNA:   3'- -CGGC-CaUUCAGauUCGUCgGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 2254 0.74 0.192258
Target:  5'- gGCCGGcucucGGGUUccaUGGGCucugcuccuGCCGCCGCCg -3'
miRNA:   3'- -CGGCCa----UUCAG---AUUCGu--------CGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 3548 0.72 0.244676
Target:  5'- --aGGUGggGGUCUcauguaguuuuguAucuguuuugcAGCAGCCGCCGCCa -3'
miRNA:   3'- cggCCAU--UCAGA-------------U----------UCGUCGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 3760 0.7 0.334266
Target:  5'- cGCCGuugGAGaCUGcAGCcuCCGCCGCCg -3'
miRNA:   3'- -CGGCca-UUCaGAU-UCGucGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 4943 0.67 0.485713
Target:  5'- aCUGGU-AGUUaagagagcuGCAGCUGCCGUCa -3'
miRNA:   3'- cGGCCAuUCAGauu------CGUCGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 8616 0.68 0.454721
Target:  5'- cGCCGGgagAGGgggcagGGGCAcGUCGgCGCCg -3'
miRNA:   3'- -CGGCCa--UUCaga---UUCGU-CGGCgGCGG- -5'
2272 3' -55.9 NC_001405.1 + 9547 0.67 0.517675
Target:  5'- cCCGGUuauGGGUUggcGGGgGGCUGCCGUg -3'
miRNA:   3'- cGGCCA---UUCAGa--UUCgUCGGCGGCGg -5'
2272 3' -55.9 NC_001405.1 + 10400 0.72 0.232569
Target:  5'- cGCUGGccccUCUAccgcCAGCCGCCGCCg -3'
miRNA:   3'- -CGGCCauucAGAUuc--GUCGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 10539 0.68 0.415131
Target:  5'- gGCCGGUGAGgcgugcGCAGUCGUugaCGCUc -3'
miRNA:   3'- -CGGCCAUUCagauu-CGUCGGCG---GCGG- -5'
2272 3' -55.9 NC_001405.1 + 10846 0.71 0.279765
Target:  5'- gGCCaGUGgccaaaaaAG-CUAgcgcAGCAGCCGCCGCg -3'
miRNA:   3'- -CGGcCAU--------UCaGAU----UCGUCGGCGGCGg -5'
2272 3' -55.9 NC_001405.1 + 10909 0.66 0.572638
Target:  5'- cCCGGUucGAGUCUcGGGcCGGCCGgaCUGCg -3'
miRNA:   3'- cGGCCA--UUCAGA-UUC-GUCGGC--GGCGg -5'
2272 3' -55.9 NC_001405.1 + 11452 0.69 0.39521
Target:  5'- aCCGGgauuAGUCccGcgcgcgcacacguGGCGGCCGCCGaCCu -3'
miRNA:   3'- cGGCCau--UCAGa-U-------------UCGUCGGCGGC-GG- -5'
2272 3' -55.9 NC_001405.1 + 11539 0.66 0.56151
Target:  5'- -gCGGUuaccAGGUC--GGCGGCCGCCa-- -3'
miRNA:   3'- cgGCCA----UUCAGauUCGUCGGCGGcgg -5'
2272 3' -55.9 NC_001405.1 + 12391 0.68 0.424831
Target:  5'- gGCCGGacGGcuggCUcuGCAG-CGCCGCCc -3'
miRNA:   3'- -CGGCCauUCa---GAuuCGUCgGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 12491 0.78 0.094344
Target:  5'- aGCCGGUuGGcCU--GCGGCUGCUGCCg -3'
miRNA:   3'- -CGGCCAuUCaGAuuCGUCGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 12680 0.71 0.287097
Target:  5'- aGCCGGUccAGGUUggucuGCAcGuuGCCGCUg -3'
miRNA:   3'- -CGGCCA--UUCAGauu--CGU-CggCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 13243 0.66 0.543833
Target:  5'- cGCCGGUuGGUCagcAGGUAGUUcaggguugccuccagGCUGCCc -3'
miRNA:   3'- -CGGCCAuUCAGa--UUCGUCGG---------------CGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 15142 0.66 0.56151
Target:  5'- uGCCGcGUugGAGUUcucuUccGC-GCCGCUGCCa -3'
miRNA:   3'- -CGGC-CA--UUCAG----AuuCGuCGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 16288 0.81 0.055426
Target:  5'- gGCCGGUGcgacgugcgcGGUU-AAGCagGGCCGCCGCCg -3'
miRNA:   3'- -CGGCCAU----------UCAGaUUCG--UCGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 16305 0.7 0.334266
Target:  5'- uGCCccccaGGUccAGG-CgacGAGCGGCCGCCGCa -3'
miRNA:   3'- -CGG-----CCA--UUCaGa--UUCGUCGGCGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.