miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2272 3' -55.9 NC_001405.1 + 17268 0.69 0.359895
Target:  5'- uGCCGc--GGUgcAGGCGGCCGCUGCg -3'
miRNA:   3'- -CGGCcauUCAgaUUCGUCGGCGGCGg -5'
2272 3' -55.9 NC_001405.1 + 16305 0.7 0.334266
Target:  5'- uGCCccccaGGUccAGG-CgacGAGCGGCCGCCGCa -3'
miRNA:   3'- -CGG-----CCA--UUCaGa--UUCGUCGGCGGCGg -5'
2272 3' -55.9 NC_001405.1 + 3760 0.7 0.334266
Target:  5'- cGCCGuugGAGaCUGcAGCcuCCGCCGCCg -3'
miRNA:   3'- -CGGCca-UUCaGAU-UCGucGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 12680 0.71 0.287097
Target:  5'- aGCCGGUccAGGUUggucuGCAcGuuGCCGCUg -3'
miRNA:   3'- -CGGCCA--UUCAGauu--CGU-CggCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 10846 0.71 0.279765
Target:  5'- gGCCaGUGgccaaaaaAG-CUAgcgcAGCAGCCGCCGCg -3'
miRNA:   3'- -CGGcCAU--------UCaGAU----UCGUCGGCGGCGg -5'
2272 3' -55.9 NC_001405.1 + 3548 0.72 0.244676
Target:  5'- --aGGUGggGGUCUcauguaguuuuguAucuguuuugcAGCAGCCGCCGCCa -3'
miRNA:   3'- cggCCAU--UCAGA-------------U----------UCGUCGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 10400 0.72 0.232569
Target:  5'- cGCUGGccccUCUAccgcCAGCCGCCGCCg -3'
miRNA:   3'- -CGGCCauucAGAUuc--GUCGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 2254 0.74 0.192258
Target:  5'- gGCCGGcucucGGGUUccaUGGGCucugcuccuGCCGCCGCCg -3'
miRNA:   3'- -CGGCCa----UUCAG---AUUCGu--------CGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 12491 0.78 0.094344
Target:  5'- aGCCGGUuGGcCU--GCGGCUGCUGCCg -3'
miRNA:   3'- -CGGCCAuUCaGAuuCGUCGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 16288 0.81 0.055426
Target:  5'- gGCCGGUGcgacgugcgcGGUU-AAGCagGGCCGCCGCCg -3'
miRNA:   3'- -CGGCCAU----------UCAGaUUCG--UCGGCGGCGG- -5'
2272 3' -55.9 NC_001405.1 + 26521 1.14 0.000207
Target:  5'- gGCCGGUAAGUCUAAGCAGCCGCCGCCg -3'
miRNA:   3'- -CGGCCAUUCAGAUUCGUCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.