miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2272 5' -52.6 NC_001405.1 + 15827 0.67 0.659936
Target:  5'- aGGGGCAGguGCGGCGUCu-GGCg--- -3'
miRNA:   3'- -UCUCGUUguUGUCGCGGuuCCGaugg -5'
2272 5' -52.6 NC_001405.1 + 27980 0.67 0.65877
Target:  5'- aAGAGCAuaucgagggcccgGCGcACGGCGUCc-GGCUcACCa -3'
miRNA:   3'- -UCUCGU-------------UGU-UGUCGCGGuuCCGA-UGG- -5'
2272 5' -52.6 NC_001405.1 + 20803 0.67 0.648257
Target:  5'- uGAGCAugGcuucCAGCGUgGAGGCcguguuguggGCCa -3'
miRNA:   3'- uCUCGUugUu---GUCGCGgUUCCGa---------UGG- -5'
2272 5' -52.6 NC_001405.1 + 10331 0.67 0.647088
Target:  5'- aAGuGCGGCGGCGGCuggcgguagagggGCCAgcguaGGGUgGCCg -3'
miRNA:   3'- -UCuCGUUGUUGUCG-------------CGGU-----UCCGaUGG- -5'
2272 5' -52.6 NC_001405.1 + 26290 0.67 0.64124
Target:  5'- uGGGUGGCGGCGGCGgCAGcugcagcuucuuuuuGGgUGCCa -3'
miRNA:   3'- uCUCGUUGUUGUCGCgGUU---------------CCgAUGG- -5'
2272 5' -52.6 NC_001405.1 + 15062 0.67 0.62486
Target:  5'- -cGGCAACAACAGUGgCAGcGGCg--- -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUU-CCGaugg -5'
2272 5' -52.6 NC_001405.1 + 6423 0.67 0.62486
Target:  5'- cAGGGUGACAAgguCAaCGCUGGuGGCUACCu -3'
miRNA:   3'- -UCUCGUUGUU---GUcGCGGUU-CCGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 17010 0.68 0.613166
Target:  5'- uGGGCAGCAccugcuGCAGUGUCAcGGGCUu-- -3'
miRNA:   3'- uCUCGUUGU------UGUCGCGGU-UCCGAugg -5'
2272 5' -52.6 NC_001405.1 + 14066 0.68 0.613166
Target:  5'- uGGGGCGA-AGguGCGCaaacGGGUUGCCa -3'
miRNA:   3'- -UCUCGUUgUUguCGCGgu--UCCGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 16256 0.68 0.613166
Target:  5'- cGGGCGGCcauGCGG-GCCGcucgaAGGCUgGCCg -3'
miRNA:   3'- uCUCGUUGu--UGUCgCGGU-----UCCGA-UGG- -5'
2272 5' -52.6 NC_001405.1 + 16497 0.68 0.613166
Target:  5'- -cAGCGGCGGCGGCGCgCAAcgaaGCUAUg -3'
miRNA:   3'- ucUCGUUGUUGUCGCG-GUUc---CGAUGg -5'
2272 5' -52.6 NC_001405.1 + 17309 0.68 0.601491
Target:  5'- --cGCGGCAucugcCAcCGCCGAGGCaACCg -3'
miRNA:   3'- ucuCGUUGUu----GUcGCGGUUCCGaUGG- -5'
2272 5' -52.6 NC_001405.1 + 17563 0.68 0.601491
Target:  5'- -cGGCGACGGCGGCGgCG-GGUU-CCa -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUuCCGAuGG- -5'
2272 5' -52.6 NC_001405.1 + 16846 0.68 0.601491
Target:  5'- uGAGCAGgcCAACgAGCGCCucGGGGaguuUGCCu -3'
miRNA:   3'- uCUCGUU--GUUG-UCGCGG--UUCCg---AUGG- -5'
2272 5' -52.6 NC_001405.1 + 13967 0.68 0.582877
Target:  5'- cGGcAGCGACAGCAGCGUCcuggauuugggagggAGuGGCaACCc -3'
miRNA:   3'- -UC-UCGUUGUUGUCGCGG---------------UU-CCGaUGG- -5'
2272 5' -52.6 NC_001405.1 + 6686 0.69 0.55519
Target:  5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3'
miRNA:   3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5'
2272 5' -52.6 NC_001405.1 + 21724 0.69 0.55519
Target:  5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3'
miRNA:   3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5'
2272 5' -52.6 NC_001405.1 + 15501 0.69 0.55519
Target:  5'- cAGAuCAGCAACuuuccgguggugGGCGCCGAGcuGUUGCCc -3'
miRNA:   3'- -UCUcGUUGUUG------------UCGCGGUUC--CGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 26522 0.69 0.543764
Target:  5'- -cGGCGAacaGGCAGUGCCGGcGGC-GCCu -3'
miRNA:   3'- ucUCGUUg--UUGUCGCGGUU-CCGaUGG- -5'
2272 5' -52.6 NC_001405.1 + 5531 0.69 0.543764
Target:  5'- aAGGGCaAGCuGC-GCGCCAAGG--GCCa -3'
miRNA:   3'- -UCUCG-UUGuUGuCGCGGUUCCgaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.