miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22721 3' -59.8 NC_005091.1 + 34347 0.76 0.127182
Target:  5'- cGGCCGGccGCGCUUGUCGuacUGCACgCCg -3'
miRNA:   3'- -CCGGCCcuUGCGAACGGCc--ACGUG-GG- -5'
22721 3' -59.8 NC_005091.1 + 34655 0.69 0.357107
Target:  5'- cGCCGGGGaugACGUUgaUGUCGG-GCAUCg -3'
miRNA:   3'- cCGGCCCU---UGCGA--ACGGCCaCGUGGg -5'
22721 3' -59.8 NC_005091.1 + 35747 0.66 0.50321
Target:  5'- aGCCGGGGcauccgcgcACGCgaGUCGGc-UACCCg -3'
miRNA:   3'- cCGGCCCU---------UGCGaaCGGCCacGUGGG- -5'
22721 3' -59.8 NC_005091.1 + 43723 0.69 0.34105
Target:  5'- aGGuCCGGGcauuucuCGCUUgGCagaaaGGUGCGCCg -3'
miRNA:   3'- -CC-GGCCCuu-----GCGAA-CGg----CCACGUGGg -5'
22721 3' -59.8 NC_005091.1 + 43995 0.72 0.216855
Target:  5'- aGCUGGGAgaaguagacGCGCUUcucgauaugcaggucGCCGGgaagcgacUGCGCCCa -3'
miRNA:   3'- cCGGCCCU---------UGCGAA---------------CGGCC--------ACGUGGG- -5'
22721 3' -59.8 NC_005091.1 + 44434 1.14 0.000194
Target:  5'- aGGCCGGGAACGCUUGCCGGUGCACCCg -3'
miRNA:   3'- -CCGGCCCUUGCGAACGGCCACGUGGG- -5'
22721 3' -59.8 NC_005091.1 + 45328 0.67 0.426464
Target:  5'- -uCCGGGcgcAACGCgcgGCCGGUagacgacagaGCGCCg -3'
miRNA:   3'- ccGGCCC---UUGCGaa-CGGCCA----------CGUGGg -5'
22721 3' -59.8 NC_005091.1 + 51345 0.68 0.417362
Target:  5'- --gCGcGGAACGcCUUGCgCGGguucgugauuUGCGCCCg -3'
miRNA:   3'- ccgGC-CCUUGC-GAACG-GCC----------ACGUGGG- -5'
22721 3' -59.8 NC_005091.1 + 53174 0.7 0.317957
Target:  5'- cGCgCGGGcGCGagcCUU-CCGGUGCAUCCg -3'
miRNA:   3'- cCG-GCCCuUGC---GAAcGGCCACGUGGG- -5'
22721 3' -59.8 NC_005091.1 + 53654 0.67 0.445015
Target:  5'- cGCCGGGGuuGCGCUgGCaauGGUGCGa-- -3'
miRNA:   3'- cCGGCCCU--UGCGAaCGg--CCACGUggg -5'
22721 3' -59.8 NC_005091.1 + 54994 0.67 0.445015
Target:  5'- cGGCCGGGcg-GCccGCCGGUau-CCCg -3'
miRNA:   3'- -CCGGCCCuugCGaaCGGCCAcguGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.