miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22721 5' -52.3 NC_005091.1 + 30729 0.66 0.868576
Target:  5'- -----cGAcguGGUCgGGACGGGuCCGGGUc -3'
miRNA:   3'- guuuuaCU---UCGGgCCUGCUU-GGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 32593 0.69 0.73499
Target:  5'- -----cGcAGGCUCaGACGuACCGGGCa -3'
miRNA:   3'- guuuuaC-UUCGGGcCUGCuUGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 33721 0.72 0.580643
Target:  5'- --uGGUGAAGUCCcGAUGccGCCGGGCc -3'
miRNA:   3'- guuUUACUUCGGGcCUGCu-UGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 33966 0.67 0.851926
Target:  5'- ----cUGAAGCC--GAUGGguacGCCGGGCg -3'
miRNA:   3'- guuuuACUUCGGgcCUGCU----UGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 41215 0.68 0.775639
Target:  5'- uCAAGA--AGGUCCucgccgaacacaaGGACGAACCGGuGCu -3'
miRNA:   3'- -GUUUUacUUCGGG-------------CCUGCUUGGCC-CG- -5'
22721 5' -52.3 NC_005091.1 + 43091 0.7 0.680616
Target:  5'- cCAAGGUcgccuuGCCCGGcgcuuucgcgACGAGCgGGGCg -3'
miRNA:   3'- -GUUUUAcuu---CGGGCC----------UGCUUGgCCCG- -5'
22721 5' -52.3 NC_005091.1 + 44432 0.68 0.796613
Target:  5'- -----aGAGGCCgGGaACGcuuGCCGGuGCa -3'
miRNA:   3'- guuuuaCUUCGGgCC-UGCu--UGGCC-CG- -5'
22721 5' -52.3 NC_005091.1 + 44472 1.12 0.001547
Target:  5'- uCAAAAUGAAGCCCGGACGAACCGGGCu -3'
miRNA:   3'- -GUUUUACUUCGGGCCUGCUUGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 44559 0.76 0.36002
Target:  5'- -----aGAAGCCCGGuuCGu-CCGGGCu -3'
miRNA:   3'- guuuuaCUUCGGGCCu-GCuuGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 45575 0.69 0.711304
Target:  5'- cCGAuGUGAAGCuggCCGGcgucggcuuccugACGAagaacacGCCGGGCg -3'
miRNA:   3'- -GUUuUACUUCG---GGCC-------------UGCU-------UGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 48175 0.72 0.558665
Target:  5'- gGAAggGAAGCCUuauaGGacaagGCGAGCCGGGg -3'
miRNA:   3'- gUUUuaCUUCGGG----CC-----UGCUUGGCCCg -5'
22721 5' -52.3 NC_005091.1 + 49087 0.71 0.591702
Target:  5'- gUAAAA--AAGCCCGacACGAugGCCGGGCg -3'
miRNA:   3'- -GUUUUacUUCGGGCc-UGCU--UGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 51871 0.67 0.851926
Target:  5'- --------cGCCCGGAC--GCCGGGa -3'
miRNA:   3'- guuuuacuuCGGGCCUGcuUGGCCCg -5'
22721 5' -52.3 NC_005091.1 + 52425 0.68 0.786716
Target:  5'- gCAAGcAUGGuuAGCUCcaguggaaucaGGGCGcGCCGGGCg -3'
miRNA:   3'- -GUUU-UACU--UCGGG-----------CCUGCuUGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 53342 0.72 0.547763
Target:  5'- --------cGCUCGGcuACGAGCCGGGCc -3'
miRNA:   3'- guuuuacuuCGGGCC--UGCUUGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 54910 0.72 0.580643
Target:  5'- --uGAUGGcgccGCCCGGACGggUCGGa- -3'
miRNA:   3'- guuUUACUu---CGGGCCUGCuuGGCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.