miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22722 3' -54.9 NC_005091.1 + 56108 0.77 0.217258
Target:  5'- uCCGGAuuccagcgcGGGCGGGAGgucgGCCG-GCGCGCa -3'
miRNA:   3'- -GGCCUu--------CUCGUCCUU----UGGCuCGCGUG- -5'
22722 3' -54.9 NC_005091.1 + 7497 0.68 0.641843
Target:  5'- gCCGGuucuucGGGCAGcucgaccAAGCCGAgGCGCACc -3'
miRNA:   3'- -GGCCuu----CUCGUCc------UUUGGCU-CGCGUG- -5'
22722 3' -54.9 NC_005091.1 + 46198 0.67 0.663772
Target:  5'- uCCGGcacGAGCAGGAGuUUG-GCGUGCa -3'
miRNA:   3'- -GGCCuu-CUCGUCCUUuGGCuCGCGUG- -5'
22722 3' -54.9 NC_005091.1 + 28327 0.67 0.671423
Target:  5'- gCCGGuu--GCAccGGAAaccaucaucgucacGCCGGGCGCAUg -3'
miRNA:   3'- -GGCCuucuCGU--CCUU--------------UGGCUCGCGUG- -5'
22722 3' -54.9 NC_005091.1 + 56426 0.67 0.674697
Target:  5'- gCGGGAcGGCAGGAAAUCuGGCGgGg -3'
miRNA:   3'- gGCCUUcUCGUCCUUUGGcUCGCgUg -5'
22722 3' -54.9 NC_005091.1 + 44829 0.67 0.700734
Target:  5'- gCCGGcAAGGGCGGcggcaaggcagcaacGAAGCCGAa-GCACu -3'
miRNA:   3'- -GGCC-UUCUCGUC---------------CUUUGGCUcgCGUG- -5'
22722 3' -54.9 NC_005091.1 + 53761 0.67 0.717888
Target:  5'- aCGGuuugcGAGCAuu--GCCGAGCGCAa -3'
miRNA:   3'- gGCCuu---CUCGUccuuUGGCUCGCGUg -5'
22722 3' -54.9 NC_005091.1 + 55055 0.66 0.749433
Target:  5'- gCCGGAcgaGGGGCgcagaaaacGGGAcAGCCGcGCgGCGCu -3'
miRNA:   3'- -GGCCU---UCUCG---------UCCU-UUGGCuCG-CGUG- -5'
22722 3' -54.9 NC_005091.1 + 6270 0.66 0.759726
Target:  5'- gUGGuGGuGCGGGuuGGCCGGGUGCu- -3'
miRNA:   3'- gGCCuUCuCGUCCu-UUGGCUCGCGug -5'
22722 3' -54.9 NC_005091.1 + 11491 0.66 0.769889
Target:  5'- gCCGcGAaacaGGGGCAGG---CCGAaGCGCAg -3'
miRNA:   3'- -GGC-CU----UCUCGUCCuuuGGCU-CGCGUg -5'
22722 3' -54.9 NC_005091.1 + 45802 0.81 0.103621
Target:  5'- aUCGGAAGAGCAGu-AGCCGgcgcGGCGCGCg -3'
miRNA:   3'- -GGCCUUCUCGUCcuUUGGC----UCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.