Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22722 | 3' | -54.9 | NC_005091.1 | + | 48957 | 0.71 | 0.431713 |
Target: 5'- -aGGcGGGGCAGGAuuggggcuuGgCGGGCGCGCu -3' miRNA: 3'- ggCCuUCUCGUCCUu--------UgGCUCGCGUG- -5' |
|||||||
22722 | 3' | -54.9 | NC_005091.1 | + | 13732 | 0.71 | 0.471026 |
Target: 5'- aCGGAAGAcGCAGGcgaaccgcccGAGCCGaAGUucuGCACg -3' miRNA: 3'- gGCCUUCU-CGUCC----------UUUGGC-UCG---CGUG- -5' |
|||||||
22722 | 3' | -54.9 | NC_005091.1 | + | 31780 | 0.69 | 0.565314 |
Target: 5'- aCGGcacGAGCAGGccGCCGAcgaGCGCGa -3' miRNA: 3'- gGCCuu-CUCGUCCuuUGGCU---CGCGUg -5' |
|||||||
22722 | 3' | -54.9 | NC_005091.1 | + | 10294 | 0.69 | 0.565314 |
Target: 5'- aCGaAAGAGCuGGAAAUCG-GCGCGa -3' miRNA: 3'- gGCcUUCUCGuCCUUUGGCuCGCGUg -5' |
|||||||
22722 | 3' | -54.9 | NC_005091.1 | + | 8086 | 0.68 | 0.61988 |
Target: 5'- gCGGccGAuGUAGGAAcgGCCGAcGUGCAUg -3' miRNA: 3'- gGCCuuCU-CGUCCUU--UGGCU-CGCGUG- -5' |
|||||||
22722 | 3' | -54.9 | NC_005091.1 | + | 55830 | 0.68 | 0.641843 |
Target: 5'- gCGacGAAGAGCGGcGcAGCCGgucagcaacuGGCGCACg -3' miRNA: 3'- gGC--CUUCUCGUC-CuUUGGC----------UCGCGUG- -5' |
|||||||
22722 | 3' | -54.9 | NC_005091.1 | + | 15167 | 0.66 | 0.728503 |
Target: 5'- cCCGGAucGGGGac-GAGACCGGccGCGUGCg -3' miRNA: 3'- -GGCCU--UCUCgucCUUUGGCU--CGCGUG- -5' |
|||||||
22722 | 3' | -54.9 | NC_005091.1 | + | 10411 | 0.66 | 0.739022 |
Target: 5'- aCGGAAGA-CAGGGgcuGACCguGAGCGgcCGCa -3' miRNA: 3'- gGCCUUCUcGUCCU---UUGG--CUCGC--GUG- -5' |
|||||||
22722 | 3' | -54.9 | NC_005091.1 | + | 394 | 0.66 | 0.769889 |
Target: 5'- gCGGccAAGcGGCGGGGA---GAGCGCGCg -3' miRNA: 3'- gGCC--UUC-UCGUCCUUuggCUCGCGUG- -5' |
|||||||
22722 | 3' | -54.9 | NC_005091.1 | + | 57788 | 0.66 | 0.769889 |
Target: 5'- gCGGccAAGcGGCGGGGA---GAGCGCGCg -3' miRNA: 3'- gGCC--UUC-UCGUCCUUuggCUCGCGUG- -5' |
|||||||
22722 | 3' | -54.9 | NC_005091.1 | + | 45113 | 1.12 | 0.000725 |
Target: 5'- gCCGGAAGAGCAGGAAACCGAGCGCACg -3' miRNA: 3'- -GGCCUUCUCGUCCUUUGGCUCGCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home