miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22722 3' -54.9 NC_005091.1 + 56512 0.7 0.522573
Target:  5'- aUCGGAGGuuacuucGUaugGGGGAGCCGAGCGUu- -3'
miRNA:   3'- -GGCCUUCu------CG---UCCUUUGGCUCGCGug -5'
22722 3' -54.9 NC_005091.1 + 54508 0.7 0.491353
Target:  5'- aCGGAAG-GCGGcGAAACCcuGCGCGg -3'
miRNA:   3'- gGCCUUCuCGUC-CUUUGGcuCGCGUg -5'
22722 3' -54.9 NC_005091.1 + 13732 0.71 0.471026
Target:  5'- aCGGAAGAcGCAGGcgaaccgcccGAGCCGaAGUucuGCACg -3'
miRNA:   3'- gGCCUUCU-CGUCC----------UUUGGC-UCG---CGUG- -5'
22722 3' -54.9 NC_005091.1 + 48957 0.71 0.431713
Target:  5'- -aGGcGGGGCAGGAuuggggcuuGgCGGGCGCGCu -3'
miRNA:   3'- ggCCuUCUCGUCCUu--------UgGCUCGCGUG- -5'
22722 3' -54.9 NC_005091.1 + 52349 0.73 0.367796
Target:  5'- aCGGgcGAGCAGGAcggAAUCGAGaugacgacaaGCGCg -3'
miRNA:   3'- gGCCuuCUCGUCCU---UUGGCUCg---------CGUG- -5'
22722 3' -54.9 NC_005091.1 + 29620 0.74 0.32629
Target:  5'- gCGGgcGAGCGGGAgGGCCGuacGCuGCGCg -3'
miRNA:   3'- gGCCuuCUCGUCCU-UUGGCu--CG-CGUG- -5'
22722 3' -54.9 NC_005091.1 + 16414 0.74 0.303102
Target:  5'- gCGGggGcGGCGGGAuuCCGGaCGCACc -3'
miRNA:   3'- gGCCuuC-UCGUCCUuuGGCUcGCGUG- -5'
22722 3' -54.9 NC_005091.1 + 29481 0.75 0.281204
Target:  5'- aCCGGgcGAGCgacguAGGAcGCUG-GCGCGCg -3'
miRNA:   3'- -GGCCuuCUCG-----UCCUuUGGCuCGCGUG- -5'
22722 3' -54.9 NC_005091.1 + 56108 0.77 0.217258
Target:  5'- uCCGGAuuccagcgcGGGCGGGAGgucgGCCG-GCGCGCa -3'
miRNA:   3'- -GGCCUu--------CUCGUCCUU----UGGCuCGCGUG- -5'
22722 3' -54.9 NC_005091.1 + 45802 0.81 0.103621
Target:  5'- aUCGGAAGAGCAGu-AGCCGgcgcGGCGCGCg -3'
miRNA:   3'- -GGCCUUCUCGUCcuUUGGC----UCGCGUG- -5'
22722 3' -54.9 NC_005091.1 + 45113 1.12 0.000725
Target:  5'- gCCGGAAGAGCAGGAAACCGAGCGCACg -3'
miRNA:   3'- -GGCCUUCUCGUCCUUUGGCUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.