miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22722 5' -57.2 NC_005091.1 + 36727 0.66 0.626329
Target:  5'- cGGCUCGCCGuCGccAUCaACGUcgUCCGg -3'
miRNA:   3'- uUCGAGCGGC-GC--UAGaUGCGaaGGGC- -5'
22722 5' -57.2 NC_005091.1 + 40270 0.66 0.625237
Target:  5'- cGGCUCGCCGCagacguacgagaaGAUCg--GUUUCUCGu -3'
miRNA:   3'- uUCGAGCGGCG-------------CUAGaugCGAAGGGC- -5'
22722 5' -57.2 NC_005091.1 + 25526 0.66 0.61542
Target:  5'- gAGGCUCGCauguacaaCGCGuUCUACGagUUCCGg -3'
miRNA:   3'- -UUCGAGCG--------GCGCuAGAUGCgaAGGGC- -5'
22722 5' -57.2 NC_005091.1 + 11385 0.66 0.604527
Target:  5'- cGGGCgUCgGCCGCGucacgCUGCGCUUCggCCu -3'
miRNA:   3'- -UUCG-AG-CGGCGCua---GAUGCGAAG--GGc -5'
22722 5' -57.2 NC_005091.1 + 17958 0.66 0.604527
Target:  5'- cAGUugUCGCCGgcCGAUCU-CGCacaggUCCCGg -3'
miRNA:   3'- uUCG--AGCGGC--GCUAGAuGCGa----AGGGC- -5'
22722 5' -57.2 NC_005091.1 + 24388 0.66 0.593656
Target:  5'- cAGCcuaUCGCCGCGAUCaagGCGCagaUCGa -3'
miRNA:   3'- uUCG---AGCGGCGCUAGa--UGCGaagGGC- -5'
22722 5' -57.2 NC_005091.1 + 3508 0.66 0.582817
Target:  5'- cGGCUCGCUucauucgcaagGCG-UCU-CGCUguUCCCGa -3'
miRNA:   3'- uUCGAGCGG-----------CGCuAGAuGCGA--AGGGC- -5'
22722 5' -57.2 NC_005091.1 + 54947 0.66 0.572019
Target:  5'- -cGCUCGCCaaGcgCcGCGCggcugUCCCGu -3'
miRNA:   3'- uuCGAGCGGcgCuaGaUGCGa----AGGGC- -5'
22722 5' -57.2 NC_005091.1 + 16913 0.67 0.550576
Target:  5'- cAGCUUGgCGUGAUCgacaaUACGCUgacggUCCCu -3'
miRNA:   3'- uUCGAGCgGCGCUAG-----AUGCGA-----AGGGc -5'
22722 5' -57.2 NC_005091.1 + 51679 0.67 0.529385
Target:  5'- -cGCgcccgUGCCGCGcuUCUGCGCg-CCCGu -3'
miRNA:   3'- uuCGa----GCGGCGCu-AGAUGCGaaGGGC- -5'
22722 5' -57.2 NC_005091.1 + 41277 0.68 0.498189
Target:  5'- cAGCUUGCgGCGAUCUGC-CaUCgCGg -3'
miRNA:   3'- uUCGAGCGgCGCUAGAUGcGaAGgGC- -5'
22722 5' -57.2 NC_005091.1 + 26054 0.68 0.487972
Target:  5'- cAGCUCGCCGCGcac-GCGCUgauaCCa -3'
miRNA:   3'- uUCGAGCGGCGCuagaUGCGAag--GGc -5'
22722 5' -57.2 NC_005091.1 + 35071 0.69 0.438476
Target:  5'- -cGC-CGCCGUGAauUCUACGCgUUCgCCa -3'
miRNA:   3'- uuCGaGCGGCGCU--AGAUGCG-AAG-GGc -5'
22722 5' -57.2 NC_005091.1 + 44136 0.7 0.395578
Target:  5'- gGAGUaCGUCGCGcaGUCUGucgaaugggcgcaguCGCUUCCCGg -3'
miRNA:   3'- -UUCGaGCGGCGC--UAGAU---------------GCGAAGGGC- -5'
22722 5' -57.2 NC_005091.1 + 40873 0.7 0.377791
Target:  5'- cGGuCUCGCCggaugcgugcgcagcGCGAUCUACGCU-CCgGa -3'
miRNA:   3'- uUC-GAGCGG---------------CGCUAGAUGCGAaGGgC- -5'
22722 5' -57.2 NC_005091.1 + 12435 0.71 0.340594
Target:  5'- -cGCUCGUCGCGGUCUuuuuguauagcCGCUucuUCCUGa -3'
miRNA:   3'- uuCGAGCGGCGCUAGAu----------GCGA---AGGGC- -5'
22722 5' -57.2 NC_005091.1 + 23261 0.71 0.309142
Target:  5'- cAGCUCGCCGaCGcaCUGCGCgacaugccgCCCGg -3'
miRNA:   3'- uUCGAGCGGC-GCuaGAUGCGaa-------GGGC- -5'
22722 5' -57.2 NC_005091.1 + 52972 0.77 0.122724
Target:  5'- -uGCUCGCCGCGAUCaGCGaacCCCGc -3'
miRNA:   3'- uuCGAGCGGCGCUAGaUGCgaaGGGC- -5'
22722 5' -57.2 NC_005091.1 + 45152 1.06 0.001103
Target:  5'- gAAGCUCGCCGCGAUCUACGCUUCCCGc -3'
miRNA:   3'- -UUCGAGCGGCGCUAGAUGCGAAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.