miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22723 3' -52 NC_005091.1 + 33602 0.66 0.854924
Target:  5'- aGGAaACGCAGGcAGc-CGUGAUGCGGAu -3'
miRNA:   3'- -CUUgUGCGUCC-UCauGUACUGCGCUU- -5'
22723 3' -52 NC_005091.1 + 43138 0.66 0.837108
Target:  5'- aGACACGCGGGAGaagcugggGCAaGugGcCGAu -3'
miRNA:   3'- cUUGUGCGUCCUCa-------UGUaCugC-GCUu -5'
22723 3' -52 NC_005091.1 + 32317 0.66 0.837108
Target:  5'- uGAACACGCGaGAuguccGUugAcGACGCGAAg -3'
miRNA:   3'- -CUUGUGCGUcCU-----CAugUaCUGCGCUU- -5'
22723 3' -52 NC_005091.1 + 1119 0.66 0.837108
Target:  5'- cGACACGCAucuccUGCGUGGCGUGAAg -3'
miRNA:   3'- cUUGUGCGUccuc-AUGUACUGCGCUU- -5'
22723 3' -52 NC_005091.1 + 2036 0.67 0.788725
Target:  5'- uGAGC-CGCAGGGG-AC-UGGCGaCGAGa -3'
miRNA:   3'- -CUUGuGCGUCCUCaUGuACUGC-GCUU- -5'
22723 3' -52 NC_005091.1 + 50370 0.68 0.778479
Target:  5'- cGAACGCGCGGGccgccaaGCGUcGCGCGAu -3'
miRNA:   3'- -CUUGUGCGUCCuca----UGUAcUGCGCUu -5'
22723 3' -52 NC_005091.1 + 35947 0.69 0.725066
Target:  5'- aGACugGCAGGaAGUGCGU-ACGCa-- -3'
miRNA:   3'- cUUGugCGUCC-UCAUGUAcUGCGcuu -5'
22723 3' -52 NC_005091.1 + 37237 0.69 0.70292
Target:  5'- uGAACACGCcGGGcgcGUACGUGG-GCGAu -3'
miRNA:   3'- -CUUGUGCGuCCU---CAUGUACUgCGCUu -5'
22723 3' -52 NC_005091.1 + 51594 0.69 0.69173
Target:  5'- cGGGCGCGCAGaAGcGCGgcacgGGCGCGAu -3'
miRNA:   3'- -CUUGUGCGUCcUCaUGUa----CUGCGCUu -5'
22723 3' -52 NC_005091.1 + 1197 0.76 0.32868
Target:  5'- --cCACGCAGGAGaUGCGUGucgauCGCGAGc -3'
miRNA:   3'- cuuGUGCGUCCUC-AUGUACu----GCGCUU- -5'
22723 3' -52 NC_005091.1 + 40029 0.77 0.289223
Target:  5'- -uGCAUGUccugaAGGAGUGCAUGAcCGCGAAg -3'
miRNA:   3'- cuUGUGCG-----UCCUCAUGUACU-GCGCUU- -5'
22723 3' -52 NC_005091.1 + 46657 1.06 0.002999
Target:  5'- uGAACACGCAGGAGUACAUGACGCGAAg -3'
miRNA:   3'- -CUUGUGCGUCCUCAUGUACUGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.