miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22724 5' -59.5 NC_005091.1 + 32103 0.66 0.555975
Target:  5'- cCGGcCGGGUCCGCgccgacuucCGGGuuGCUGCuGGa -3'
miRNA:   3'- aGUU-GCUCAGGCG---------GCCCcgUGACG-CC- -5'
22724 5' -59.5 NC_005091.1 + 7243 0.66 0.555975
Target:  5'- gUCGgcGCGGGUCUcuuuuccuugGCCGGGGCGucCU-CGGc -3'
miRNA:   3'- -AGU--UGCUCAGG----------CGGCCCCGU--GAcGCC- -5'
22724 5' -59.5 NC_005091.1 + 37149 0.66 0.545653
Target:  5'- uUCGACGcggaAGUCuuCGUCGGcccGGCGCagUGCGGg -3'
miRNA:   3'- -AGUUGC----UCAG--GCGGCC---CCGUG--ACGCC- -5'
22724 5' -59.5 NC_005091.1 + 55070 0.66 0.535395
Target:  5'- cCGGCGGG-CCGCCcggccggacgaGGGGCGCagaaaaCGGg -3'
miRNA:   3'- aGUUGCUCaGGCGG-----------CCCCGUGac----GCC- -5'
22724 5' -59.5 NC_005091.1 + 22438 0.66 0.535395
Target:  5'- gCAGCGcGaUCCGCCuuucGGGUcauCUGCGGc -3'
miRNA:   3'- aGUUGCuC-AGGCGGc---CCCGu--GACGCC- -5'
22724 5' -59.5 NC_005091.1 + 25062 0.66 0.525205
Target:  5'- cUCGGCGAgaaGUUCGagacugcgagaCUGGucGGCACUGCGGc -3'
miRNA:   3'- -AGUUGCU---CAGGC-----------GGCC--CCGUGACGCC- -5'
22724 5' -59.5 NC_005091.1 + 25232 0.66 0.515089
Target:  5'- gCGGCGgucGGUgCGuCCGGGGCggccGCUGCa- -3'
miRNA:   3'- aGUUGC---UCAgGC-GGCCCCG----UGACGcc -5'
22724 5' -59.5 NC_005091.1 + 14003 0.67 0.475476
Target:  5'- aUCGACucGUCgCGCCGGuacaaGCUGCGGu -3'
miRNA:   3'- -AGUUGcuCAG-GCGGCCccg--UGACGCC- -5'
22724 5' -59.5 NC_005091.1 + 23490 0.67 0.446787
Target:  5'- gCGGCGAuggcgcugcucgGUCUGuUCGGcGGCGCUGCGu -3'
miRNA:   3'- aGUUGCU------------CAGGC-GGCC-CCGUGACGCc -5'
22724 5' -59.5 NC_005091.1 + 35758 0.68 0.428205
Target:  5'- -gGGCGAGcCUaaGCCGGGGCAUccGCGc -3'
miRNA:   3'- agUUGCUCaGG--CGGCCCCGUGa-CGCc -5'
22724 5' -59.5 NC_005091.1 + 28690 0.68 0.426372
Target:  5'- uUCuGCGGGcgcacgacacaCGCCGGGGC-CUGCGc -3'
miRNA:   3'- -AGuUGCUCag---------GCGGCCCCGuGACGCc -5'
22724 5' -59.5 NC_005091.1 + 2106 0.68 0.425457
Target:  5'- cUCAACGAGUCCgcgcaacugaugguGCCGGuaaGCGCgucggccgaaGCGGa -3'
miRNA:   3'- -AGUUGCUCAGG--------------CGGCCc--CGUGa---------CGCC- -5'
22724 5' -59.5 NC_005091.1 + 10043 0.68 0.419087
Target:  5'- -gGACGAGgaucgaGCCGGGGCcguaauACUGCcGGu -3'
miRNA:   3'- agUUGCUCagg---CGGCCCCG------UGACG-CC- -5'
22724 5' -59.5 NC_005091.1 + 26788 0.68 0.419087
Target:  5'- -aAGCG-GUCCGUCGaGGGCGCgGCc- -3'
miRNA:   3'- agUUGCuCAGGCGGC-CCCGUGaCGcc -5'
22724 5' -59.5 NC_005091.1 + 30859 0.69 0.342606
Target:  5'- aCGACG-GUUCGCCGGuucaguaucaaGGCACcaucgGCGGc -3'
miRNA:   3'- aGUUGCuCAGGCGGCC-----------CCGUGa----CGCC- -5'
22724 5' -59.5 NC_005091.1 + 26433 0.71 0.270054
Target:  5'- --cGCGGG-CCGCCGGGGCugccauCguaGCGGc -3'
miRNA:   3'- aguUGCUCaGGCGGCCCCGu-----Ga--CGCC- -5'
22724 5' -59.5 NC_005091.1 + 11001 0.74 0.180322
Target:  5'- cCGACGGGuuUCCGCCGGGGCuucuuuUUGCc- -3'
miRNA:   3'- aGUUGCUC--AGGCGGCCCCGu-----GACGcc -5'
22724 5' -59.5 NC_005091.1 + 47480 1.1 0.00038
Target:  5'- cUCAACGAGUCCGCCGGGGCACUGCGGa -3'
miRNA:   3'- -AGUUGCUCAGGCGGCCCCGUGACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.