Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22725 | 3' | -40.6 | NC_005091.1 | + | 34107 | 0.68 | 0.999977 |
Target: 5'- cGCGUUgAUGACGGcguuuuGAAGCGAcauuuccuuGAAACg -3' miRNA: 3'- -CGCGA-UACUGCCu-----UUUUGCUu--------UUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 33750 | 0.66 | 1 |
Target: 5'- aCGCUGUGGCuGGAAGAggcuaucGCGGc----- -3' miRNA: 3'- cGCGAUACUG-CCUUUU-------UGCUuuuuug -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 33541 | 0.76 | 0.975105 |
Target: 5'- cGCGCgccucGGCGGAGAcuucCGAAAGAGCu -3' miRNA: 3'- -CGCGaua--CUGCCUUUuu--GCUUUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 29361 | 0.67 | 0.999997 |
Target: 5'- aCGCUGcacgcGACGGAuggcGCGAcGAAGCu -3' miRNA: 3'- cGCGAUa----CUGCCUuuu-UGCUuUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 28245 | 0.68 | 0.999989 |
Target: 5'- gGCGCUGUcaccgauuucGACGcGAAGACGAc-GGACg -3' miRNA: 3'- -CGCGAUA----------CUGCcUUUUUGCUuuUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 27415 | 0.66 | 1 |
Target: 5'- gGCGCUccGGgGGAuc-ACGAAAGGc- -3' miRNA: 3'- -CGCGAuaCUgCCUuuuUGCUUUUUug -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 25240 | 0.67 | 0.999998 |
Target: 5'- uCGCUAUGGCGGcgGucgguGCGuccGGGGCg -3' miRNA: 3'- cGCGAUACUGCCuuUu----UGCuu-UUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 22821 | 0.71 | 0.999227 |
Target: 5'- cGCGCUGacggccGGCGGcgGAACGAGcuGGAAUg -3' miRNA: 3'- -CGCGAUa-----CUGCCuuUUUGCUU--UUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 16649 | 0.68 | 0.999989 |
Target: 5'- gGCGUgggGUacgcACGGAAAGACGggGgcuGGACu -3' miRNA: 3'- -CGCGa--UAc---UGCCUUUUUGCuuU---UUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 15225 | 0.71 | 0.999393 |
Target: 5'- gGCGCaacGGCGGAAcGACGAAGu--- -3' miRNA: 3'- -CGCGauaCUGCCUUuUUGCUUUuuug -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 6885 | 0.67 | 0.999996 |
Target: 5'- cGCGCa---GCGGAAGcgggcgcGACGAAGAAAg -3' miRNA: 3'- -CGCGauacUGCCUUU-------UUGCUUUUUUg -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 6456 | 0.66 | 1 |
Target: 5'- cGCGCUGcgcUGAaGGAAGcaggcgcGACGGAuggcGAACg -3' miRNA: 3'- -CGCGAU---ACUgCCUUU-------UUGCUUu---UUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 5495 | 0.7 | 0.999881 |
Target: 5'- cGCGCUGccgcaggaacUGACGGAAAucGCGuuu-AACc -3' miRNA: 3'- -CGCGAU----------ACUGCCUUUu-UGCuuuuUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 4822 | 0.67 | 0.999999 |
Target: 5'- cGCGCUcgGcGCGGcgGcAACGGucAAGCg -3' miRNA: 3'- -CGCGAuaC-UGCCuuU-UUGCUuuUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 3552 | 0.68 | 0.999989 |
Target: 5'- aCGCcGUGACGGAc--GCGAAccuGCg -3' miRNA: 3'- cGCGaUACUGCCUuuuUGCUUuuuUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 3056 | 0.7 | 0.99972 |
Target: 5'- cGCGUgcUGACGGAGcagcucCGAAAAAGg -3' miRNA: 3'- -CGCGauACUGCCUUuuu---GCUUUUUUg -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 1712 | 0.66 | 0.999999 |
Target: 5'- aGCGCgucaaaGGGuuacuugccGAAGCGAAGGAGCa -3' miRNA: 3'- -CGCGauacugCCU---------UUUUGCUUUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 1441 | 0.74 | 0.993102 |
Target: 5'- cGCGCUuccACGGGAAGaacGCGAAGAAGu -3' miRNA: 3'- -CGCGAuacUGCCUUUU---UGCUUUUUUg -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 1014 | 0.66 | 1 |
Target: 5'- cGCGCUGcucGGCGucAAuACGAcgGAACg -3' miRNA: 3'- -CGCGAUa--CUGCcuUUuUGCUuuUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 639 | 0.71 | 0.999227 |
Target: 5'- cGCGCUGaacGCGGAGAAuCGAccGGGCa -3' miRNA: 3'- -CGCGAUac-UGCCUUUUuGCUuuUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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