miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22726 3' -55 NC_005091.1 + 40740 0.72 0.36461
Target:  5'- -cGUGaagGGCGCUGCGCGuaccgagaauucGCGACGCGg -3'
miRNA:   3'- guUACg--CCGUGACGUGCu-----------CGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 30346 0.73 0.340976
Target:  5'- aGAU-CGaGCAuCUGCACGAGCGcCACGg -3'
miRNA:   3'- gUUAcGC-CGU-GACGUGCUCGCuGUGC- -5'
22726 3' -55 NC_005091.1 + 49404 0.73 0.332808
Target:  5'- uGAUGCGG-ACgGCACGAGCgcuaucGACGCGu -3'
miRNA:   3'- gUUACGCCgUGaCGUGCUCG------CUGUGC- -5'
22726 3' -55 NC_005091.1 + 51848 0.75 0.252469
Target:  5'- gGAUGCGauGCUGCGCGAGUcGCGCGa -3'
miRNA:   3'- gUUACGCcgUGACGUGCUCGcUGUGC- -5'
22726 3' -55 NC_005091.1 + 21587 0.69 0.53214
Target:  5'- ---cGCGGCAgaGCACGcuuGCGGCGa- -3'
miRNA:   3'- guuaCGCCGUgaCGUGCu--CGCUGUgc -5'
22726 3' -55 NC_005091.1 + 45793 0.69 0.542833
Target:  5'- gCAGUaGcCGGCGCgGCGCGcGGCcGACGCGu -3'
miRNA:   3'- -GUUA-C-GCCGUGaCGUGC-UCG-CUGUGC- -5'
22726 3' -55 NC_005091.1 + 9282 0.66 0.749336
Target:  5'- gCGAUuCGGgucgccgGCUGCACG-GCGACGCa -3'
miRNA:   3'- -GUUAcGCCg------UGACGUGCuCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 14760 0.66 0.71765
Target:  5'- uCAGUGCGGUugUcgGCcCGGcCGAUACGa -3'
miRNA:   3'- -GUUACGCCGugA--CGuGCUcGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 31099 0.67 0.696083
Target:  5'- gCGAUcCGGCGCucaccgUGCaacugACGGGCGGCGCa -3'
miRNA:   3'- -GUUAcGCCGUG------ACG-----UGCUCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 36394 0.67 0.663293
Target:  5'- ---aGCGGguCgGCACGccGCGACGCu -3'
miRNA:   3'- guuaCGCCguGaCGUGCu-CGCUGUGc -5'
22726 3' -55 NC_005091.1 + 6888 0.67 0.65229
Target:  5'- uGAUGUaGUAgaGCGCGAGCuGCGCGu -3'
miRNA:   3'- gUUACGcCGUgaCGUGCUCGcUGUGC- -5'
22726 3' -55 NC_005091.1 + 52151 0.68 0.645678
Target:  5'- cCAAUGCGGCGaauaucucgaaGCGcGCGGCGCGu -3'
miRNA:   3'- -GUUACGCCGUgacg-------UGCuCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 14967 0.68 0.641268
Target:  5'- ---cGCGGUucCUGCGCGAG-GAUGCa -3'
miRNA:   3'- guuaCGCCGu-GACGUGCUCgCUGUGc -5'
22726 3' -55 NC_005091.1 + 15087 0.68 0.641268
Target:  5'- ---cGCGGUucCUGCGCGAG-GAUGCa -3'
miRNA:   3'- guuaCGCCGu-GACGUGCUCgCUGUGc -5'
22726 3' -55 NC_005091.1 + 25216 0.68 0.630238
Target:  5'- cCGggGCGGcCGCUGCACcgGGGuCGAUGCa -3'
miRNA:   3'- -GUuaCGCC-GUGACGUG--CUC-GCUGUGc -5'
22726 3' -55 NC_005091.1 + 50785 0.69 0.575303
Target:  5'- ---aGCGGUACaaGCAUG-GCGACGCu -3'
miRNA:   3'- guuaCGCCGUGa-CGUGCuCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 44529 0.69 0.575303
Target:  5'- ---aGCGGCACUG-GCGGGUG-CACc -3'
miRNA:   3'- guuaCGCCGUGACgUGCUCGCuGUGc -5'
22726 3' -55 NC_005091.1 + 34558 0.69 0.542833
Target:  5'- aAGUGCuGGCgACUGC-CGAGUGggaccGCGCGg -3'
miRNA:   3'- gUUACG-CCG-UGACGuGCUCGC-----UGUGC- -5'
22726 3' -55 NC_005091.1 + 16686 0.65 0.759673
Target:  5'- ---gGCGGCGCagggagGCAuucccgacgcacCGAGCGACgGCGu -3'
miRNA:   3'- guuaCGCCGUGa-----CGU------------GCUCGCUG-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.