miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22726 3' -55 NC_005091.1 + 51848 0.75 0.252469
Target:  5'- gGAUGCGauGCUGCGCGAGUcGCGCGa -3'
miRNA:   3'- gUUACGCcgUGACGUGCUCGcUGUGC- -5'
22726 3' -55 NC_005091.1 + 16344 0.72 0.411419
Target:  5'- -cGUGCucGGCGCguucGuCGCGAGCGGCGCa -3'
miRNA:   3'- guUACG--CCGUGa---C-GUGCUCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 55022 0.72 0.37508
Target:  5'- ---cGCGGCGCUuggcgaGCGCGuugcGGCGGCGCa -3'
miRNA:   3'- guuaCGCCGUGA------CGUGC----UCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 34558 0.69 0.542833
Target:  5'- aAGUGCuGGCgACUGC-CGAGUGggaccGCGCGg -3'
miRNA:   3'- gUUACG-CCG-UGACGuGCUCGC-----UGUGC- -5'
22726 3' -55 NC_005091.1 + 49404 0.73 0.332808
Target:  5'- uGAUGCGG-ACgGCACGAGCgcuaucGACGCGu -3'
miRNA:   3'- gUUACGCCgUGaCGUGCUCG------CUGUGC- -5'
22726 3' -55 NC_005091.1 + 44529 0.69 0.575303
Target:  5'- ---aGCGGCACUG-GCGGGUG-CACc -3'
miRNA:   3'- guuaCGCCGUGACgUGCUCGCuGUGc -5'
22726 3' -55 NC_005091.1 + 50785 0.69 0.575303
Target:  5'- ---aGCGGUACaaGCAUG-GCGACGCu -3'
miRNA:   3'- guuaCGCCGUGa-CGUGCuCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 53756 0.72 0.402131
Target:  5'- --uUGCGaGCAUUGC-CGAGCGcaACGCGu -3'
miRNA:   3'- guuACGC-CGUGACGuGCUCGC--UGUGC- -5'
22726 3' -55 NC_005091.1 + 17452 0.71 0.449861
Target:  5'- -cGUGCGGaACUGCACG-GCGAUuuGCa -3'
miRNA:   3'- guUACGCCgUGACGUGCuCGCUG--UGc -5'
22726 3' -55 NC_005091.1 + 50580 0.66 0.749336
Target:  5'- cCGGUGCGGUAgUcGCGCaacAGCGuCGCGu -3'
miRNA:   3'- -GUUACGCCGUgA-CGUGc--UCGCuGUGC- -5'
22726 3' -55 NC_005091.1 + 56063 0.66 0.745166
Target:  5'- aGAUGCcggucGGCGCguccuacuucauCGCGGGCGACACc -3'
miRNA:   3'- gUUACG-----CCGUGac----------GUGCUCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 7198 0.68 0.630238
Target:  5'- gGAUgGCGGCGa-GCAgCGAGCGGC-CGa -3'
miRNA:   3'- gUUA-CGCCGUgaCGU-GCUCGCUGuGC- -5'
22726 3' -55 NC_005091.1 + 8850 0.68 0.61921
Target:  5'- uCGGUGuUGGCGCUGCuGCGcuGGCGAUgaACGu -3'
miRNA:   3'- -GUUAC-GCCGUGACG-UGC--UCGCUG--UGC- -5'
22726 3' -55 NC_005091.1 + 55839 0.68 0.615903
Target:  5'- ---aGCGGCgcagccggucagcaACUggcGCACGAGCuGCACGg -3'
miRNA:   3'- guuaCGCCG--------------UGA---CGUGCUCGcUGUGC- -5'
22726 3' -55 NC_005091.1 + 38159 0.68 0.608193
Target:  5'- ---cGCuGGCcCUGC-CGGGCGAgACGa -3'
miRNA:   3'- guuaCG-CCGuGACGuGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 10142 0.66 0.706903
Target:  5'- ---cGcCGGCAC-GCGcCGAGCGccGCACGu -3'
miRNA:   3'- guuaC-GCCGUGaCGU-GCUCGC--UGUGC- -5'
22726 3' -55 NC_005091.1 + 26221 0.66 0.714435
Target:  5'- aCGcgGCGGCAgcuucggcCUGagcggcagcccgaaUACGAGCGAgGCGa -3'
miRNA:   3'- -GUuaCGCCGU--------GAC--------------GUGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 6998 0.66 0.738878
Target:  5'- --cUGCuGGCGgaagGCAaggUGAGCGGCACGa -3'
miRNA:   3'- guuACG-CCGUga--CGU---GCUCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 31137 0.66 0.738878
Target:  5'- uCGAUGCgcuGGCGCUGUuCGAGCuGCGa- -3'
miRNA:   3'- -GUUACG---CCGUGACGuGCUCGcUGUgc -5'
22726 3' -55 NC_005091.1 + 38906 0.66 0.738878
Target:  5'- aGAUGCaGGCGCUugauUACGGGCGA-ACGg -3'
miRNA:   3'- gUUACG-CCGUGAc---GUGCUCGCUgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.