Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22726 | 3' | -55 | NC_005091.1 | + | 15087 | 0.68 | 0.641268 |
Target: 5'- ---cGCGGUucCUGCGCGAG-GAUGCa -3' miRNA: 3'- guuaCGCCGu-GACGUGCUCgCUGUGc -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 44402 | 0.68 | 0.641268 |
Target: 5'- ---aGCGGCACUGCACauuGUGugguGCACc -3' miRNA: 3'- guuaCGCCGUGACGUGcu-CGC----UGUGc -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 37835 | 0.68 | 0.63465 |
Target: 5'- aCGGUGCGGUuguccauggugaacaACUGCcCGAGUugugagauaGACGCGc -3' miRNA: 3'- -GUUACGCCG---------------UGACGuGCUCG---------CUGUGC- -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 7198 | 0.68 | 0.630238 |
Target: 5'- gGAUgGCGGCGa-GCAgCGAGCGGC-CGa -3' miRNA: 3'- gUUA-CGCCGUgaCGU-GCUCGCUGuGC- -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 25216 | 0.68 | 0.630238 |
Target: 5'- cCGggGCGGcCGCUGCACcgGGGuCGAUGCa -3' miRNA: 3'- -GUuaCGCC-GUGACGUG--CUC-GCUGUGc -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 43102 | 0.68 | 0.630238 |
Target: 5'- --uUGCccGGCGCUuucGCgACGAGCGGgGCGa -3' miRNA: 3'- guuACG--CCGUGA---CG-UGCUCGCUgUGC- -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 49831 | 0.68 | 0.630238 |
Target: 5'- ---gGCGGC-UUGCGCGuugagcGCGGCACu -3' miRNA: 3'- guuaCGCCGuGACGUGCu-----CGCUGUGc -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 8850 | 0.68 | 0.61921 |
Target: 5'- uCGGUGuUGGCGCUGCuGCGcuGGCGAUgaACGu -3' miRNA: 3'- -GUUAC-GCCGUGACG-UGC--UCGCUG--UGC- -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 55839 | 0.68 | 0.615903 |
Target: 5'- ---aGCGGCgcagccggucagcaACUggcGCACGAGCuGCACGg -3' miRNA: 3'- guuaCGCCG--------------UGA---CGUGCUCGcUGUGC- -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 38159 | 0.68 | 0.608193 |
Target: 5'- ---cGCuGGCcCUGC-CGGGCGAgACGa -3' miRNA: 3'- guuaCG-CCGuGACGuGCUCGCUgUGC- -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 49033 | 0.68 | 0.604892 |
Target: 5'- -cGUGCGGUgcugcgggcgcgcuGCUGCgcaccguguGCGGGCGGgGCGa -3' miRNA: 3'- guUACGCCG--------------UGACG---------UGCUCGCUgUGC- -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 8071 | 0.68 | 0.586231 |
Target: 5'- ----aCGGgGCUGCACGuAGCGGC-CGa -3' miRNA: 3'- guuacGCCgUGACGUGC-UCGCUGuGC- -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 44529 | 0.69 | 0.575303 |
Target: 5'- ---aGCGGCACUG-GCGGGUG-CACc -3' miRNA: 3'- guuaCGCCGUGACgUGCUCGCuGUGc -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 50785 | 0.69 | 0.575303 |
Target: 5'- ---aGCGGUACaaGCAUG-GCGACGCu -3' miRNA: 3'- guuaCGCCGUGa-CGUGCuCGCUGUGc -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 54738 | 0.69 | 0.553596 |
Target: 5'- cCAAaGCGGCACgGCAUGAcugagauucuagGCGACAa- -3' miRNA: 3'- -GUUaCGCCGUGaCGUGCU------------CGCUGUgc -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 34558 | 0.69 | 0.542833 |
Target: 5'- aAGUGCuGGCgACUGC-CGAGUGggaccGCGCGg -3' miRNA: 3'- gUUACG-CCG-UGACGuGCUCGC-----UGUGC- -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 45793 | 0.69 | 0.542833 |
Target: 5'- gCAGUaGcCGGCGCgGCGCGcGGCcGACGCGu -3' miRNA: 3'- -GUUA-C-GCCGUGaCGUGC-UCG-CUGUGC- -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 21587 | 0.69 | 0.53214 |
Target: 5'- ---cGCGGCAgaGCACGcuuGCGGCGa- -3' miRNA: 3'- guuaCGCCGUgaCGUGCu--CGCUGUgc -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 21974 | 0.7 | 0.47995 |
Target: 5'- aCAuUGcCGGCACUGU-CGAcCGACGCGg -3' miRNA: 3'- -GUuAC-GCCGUGACGuGCUcGCUGUGC- -5' |
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22726 | 3' | -55 | NC_005091.1 | + | 13330 | 0.7 | 0.469808 |
Target: 5'- uCGAUGCGGCcaACaaguucguUGCGCGGaucGCGGCGCa -3' miRNA: 3'- -GUUACGCCG--UG--------ACGUGCU---CGCUGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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