miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22726 5' -57.9 NC_005091.1 + 48743 1.09 0.000564
Target:  5'- gGCCAUGCGUUGCGGGCACGCCACACGc -3'
miRNA:   3'- -CGGUACGCAACGCCCGUGCGGUGUGC- -5'
22726 5' -57.9 NC_005091.1 + 51577 0.79 0.093175
Target:  5'- uGUCGUGCGUcgcgUGaCGGGCGCGCagaaGCGCGg -3'
miRNA:   3'- -CGGUACGCA----AC-GCCCGUGCGg---UGUGC- -5'
22726 5' -57.9 NC_005091.1 + 49032 0.77 0.119539
Target:  5'- -aCGUGCGgugcUGCGGGCGCGCUgcuGCGCa -3'
miRNA:   3'- cgGUACGCa---ACGCCCGUGCGG---UGUGc -5'
22726 5' -57.9 NC_005091.1 + 10438 0.72 0.257482
Target:  5'- cGCCGUccuCGaUGuCGGGCGCGCgACACGc -3'
miRNA:   3'- -CGGUAc--GCaAC-GCCCGUGCGgUGUGC- -5'
22726 5' -57.9 NC_005091.1 + 50862 0.7 0.344993
Target:  5'- cGCCGaGCGUUGCcaaGCugGCC-CGCGa -3'
miRNA:   3'- -CGGUaCGCAACGcc-CGugCGGuGUGC- -5'
22726 5' -57.9 NC_005091.1 + 23770 0.7 0.35318
Target:  5'- aCCAUGCGcugaaucUGCGGGC-CGCUcuccguguACGCGg -3'
miRNA:   3'- cGGUACGCa------ACGCCCGuGCGG--------UGUGC- -5'
22726 5' -57.9 NC_005091.1 + 1224 0.7 0.35318
Target:  5'- cGCCAguuaGCGUaaUGCGccuuCACGCCACGCa -3'
miRNA:   3'- -CGGUa---CGCA--ACGCcc--GUGCGGUGUGc -5'
22726 5' -57.9 NC_005091.1 + 997 0.7 0.369962
Target:  5'- gGCC-UGCucgacGCGGGCGCGCUGCuCGg -3'
miRNA:   3'- -CGGuACGcaa--CGCCCGUGCGGUGuGC- -5'
22726 5' -57.9 NC_005091.1 + 43875 0.69 0.387281
Target:  5'- aGCCAUGCucuaUGCGcucGGCGCGCUcUACGa -3'
miRNA:   3'- -CGGUACGca--ACGC---CCGUGCGGuGUGC- -5'
22726 5' -57.9 NC_005091.1 + 15715 0.69 0.396138
Target:  5'- uGCCGUGCccccgguuGUUGCGaucuGCGCGCCAUuCGu -3'
miRNA:   3'- -CGGUACG--------CAACGCc---CGUGCGGUGuGC- -5'
22726 5' -57.9 NC_005091.1 + 22248 0.69 0.411491
Target:  5'- uGCCGaccUGCGcggaUUgcuguacgcacugcGCGGGCGCGUCACGCc -3'
miRNA:   3'- -CGGU---ACGC----AA--------------CGCCCGUGCGGUGUGc -5'
22726 5' -57.9 NC_005091.1 + 48763 0.69 0.43284
Target:  5'- gGCCGUGCGcacGCaugacGGCAUGCCuguauCACGg -3'
miRNA:   3'- -CGGUACGCaa-CGc----CCGUGCGGu----GUGC- -5'
22726 5' -57.9 NC_005091.1 + 50883 0.69 0.43284
Target:  5'- cCCAUGCuucGCGcGGCuauaGCCACACGc -3'
miRNA:   3'- cGGUACGcaaCGC-CCGug--CGGUGUGC- -5'
22726 5' -57.9 NC_005091.1 + 23225 0.67 0.501515
Target:  5'- aCCGUGcCGcUGUGGuaGCGCgGCGCGu -3'
miRNA:   3'- cGGUAC-GCaACGCCcgUGCGgUGUGC- -5'
22726 5' -57.9 NC_005091.1 + 31678 0.67 0.501515
Target:  5'- cGCCAaGCagccuucGCGGGCACGCCGg--- -3'
miRNA:   3'- -CGGUaCGcaa----CGCCCGUGCGGUgugc -5'
22726 5' -57.9 NC_005091.1 + 3036 0.67 0.517892
Target:  5'- uCCcgGCGcuuucaucguacgUGCGGGCAgCGCCcaGCGCa -3'
miRNA:   3'- cGGuaCGCa------------ACGCCCGU-GCGG--UGUGc -5'
22726 5' -57.9 NC_005091.1 + 4314 0.67 0.518923
Target:  5'- aUCGUGCugacguacggcacggUGaCGGGCGCGCCGC-CGg -3'
miRNA:   3'- cGGUACGca-------------AC-GCCCGUGCGGUGuGC- -5'
22726 5' -57.9 NC_005091.1 + 49297 0.67 0.52202
Target:  5'- cCCAUcGCGUgcUGaCGGGgGagaaGCCGCACGu -3'
miRNA:   3'- cGGUA-CGCA--AC-GCCCgUg---CGGUGUGC- -5'
22726 5' -57.9 NC_005091.1 + 26507 0.67 0.52202
Target:  5'- gGCCAUGgacuuCGUcaggcuggccgUGCGGGCAuuggcCGCCuGCACa -3'
miRNA:   3'- -CGGUAC-----GCA-----------ACGCCCGU-----GCGG-UGUGc -5'
22726 5' -57.9 NC_005091.1 + 29607 0.67 0.54704
Target:  5'- cGCCGaucuCGgUGCGGGCgagcgggagggccguACGCUGCGCGg -3'
miRNA:   3'- -CGGUac--GCaACGCCCG---------------UGCGGUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.