Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22726 | 5' | -57.9 | NC_005091.1 | + | 15715 | 0.69 | 0.396138 |
Target: 5'- uGCCGUGCccccgguuGUUGCGaucuGCGCGCCAUuCGu -3' miRNA: 3'- -CGGUACG--------CAACGCc---CGUGCGGUGuGC- -5' |
|||||||
22726 | 5' | -57.9 | NC_005091.1 | + | 997 | 0.7 | 0.369962 |
Target: 5'- gGCC-UGCucgacGCGGGCGCGCUGCuCGg -3' miRNA: 3'- -CGGuACGcaa--CGCCCGUGCGGUGuGC- -5' |
|||||||
22726 | 5' | -57.9 | NC_005091.1 | + | 23770 | 0.7 | 0.35318 |
Target: 5'- aCCAUGCGcugaaucUGCGGGC-CGCUcuccguguACGCGg -3' miRNA: 3'- cGGUACGCa------ACGCCCGuGCGG--------UGUGC- -5' |
|||||||
22726 | 5' | -57.9 | NC_005091.1 | + | 49032 | 0.77 | 0.119539 |
Target: 5'- -aCGUGCGgugcUGCGGGCGCGCUgcuGCGCa -3' miRNA: 3'- cgGUACGCa---ACGCCCGUGCGG---UGUGc -5' |
|||||||
22726 | 5' | -57.9 | NC_005091.1 | + | 51577 | 0.79 | 0.093175 |
Target: 5'- uGUCGUGCGUcgcgUGaCGGGCGCGCagaaGCGCGg -3' miRNA: 3'- -CGGUACGCA----AC-GCCCGUGCGg---UGUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home