miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22727 5' -60.4 NC_005091.1 + 13067 0.66 0.447329
Target:  5'- -gCCCCGUCAGCAuCGCGGUa--CUGg -3'
miRNA:   3'- agGGGGCAGUCGU-GCGCUAcccGACg -5'
22727 5' -60.4 NC_005091.1 + 5412 0.66 0.437943
Target:  5'- aUUUCCGUCAGUuccugcggcaGCGCGAccGGUUGCu -3'
miRNA:   3'- aGGGGGCAGUCG----------UGCGCUacCCGACG- -5'
22727 5' -60.4 NC_005091.1 + 30903 0.67 0.401567
Target:  5'- gCCCaUCGUCAGuCGCGUGAUcGuGCUGUu -3'
miRNA:   3'- aGGG-GGCAGUC-GUGCGCUAcC-CGACG- -5'
22727 5' -60.4 NC_005091.1 + 36976 0.67 0.401567
Target:  5'- uUCUCCUGagaUCGGCGCGaUGAUGGcGCgcucGCg -3'
miRNA:   3'- -AGGGGGC---AGUCGUGC-GCUACC-CGa---CG- -5'
22727 5' -60.4 NC_005091.1 + 9529 0.68 0.358894
Target:  5'- uUCCCgCCGUCGugcccGCAccCGUGAcGaGGCUGCc -3'
miRNA:   3'- -AGGG-GGCAGU-----CGU--GCGCUaC-CCGACG- -5'
22727 5' -60.4 NC_005091.1 + 56778 0.69 0.319496
Target:  5'- aUCUCgGUCGGUugaucgcgggcaACGCGAUGgcguGGCUGCa -3'
miRNA:   3'- aGGGGgCAGUCG------------UGCGCUAC----CCGACG- -5'
22727 5' -60.4 NC_005091.1 + 14470 0.69 0.319496
Target:  5'- -aCCCCGccgUAGCGauCGUGAcaGGGCUGCu -3'
miRNA:   3'- agGGGGCa--GUCGU--GCGCUa-CCCGACG- -5'
22727 5' -60.4 NC_005091.1 + 16258 0.7 0.276618
Target:  5'- aCCUCCGUgaAGaUGCGCaAUGGGCUGUg -3'
miRNA:   3'- aGGGGGCAg-UC-GUGCGcUACCCGACG- -5'
22727 5' -60.4 NC_005091.1 + 3129 0.71 0.246952
Target:  5'- -gCUCCGUCAGCACGCGAaucgcguucucgcucUgcGGGCUa- -3'
miRNA:   3'- agGGGGCAGUCGUGCGCU---------------A--CCCGAcg -5'
22727 5' -60.4 NC_005091.1 + 40066 0.71 0.226185
Target:  5'- gUCaCCCUGcgcaagaUCGGCgACGCGucgaagGGGCUGCa -3'
miRNA:   3'- -AG-GGGGC-------AGUCG-UGCGCua----CCCGACG- -5'
22727 5' -60.4 NC_005091.1 + 5093 0.72 0.204808
Target:  5'- gCCCCUG-CGGgGCGUGAcaUGGGCgGCc -3'
miRNA:   3'- aGGGGGCaGUCgUGCGCU--ACCCGaCG- -5'
22727 5' -60.4 NC_005091.1 + 1390 0.73 0.157859
Target:  5'- uUCCuCCUGUUcGCGC-CGAUGGGCgGCa -3'
miRNA:   3'- -AGG-GGGCAGuCGUGcGCUACCCGaCG- -5'
22727 5' -60.4 NC_005091.1 + 7534 0.74 0.141962
Target:  5'- aUCgCCgGUCGGCACgGCGGaaGGGCUGUa -3'
miRNA:   3'- -AGgGGgCAGUCGUG-CGCUa-CCCGACG- -5'
22727 5' -60.4 NC_005091.1 + 26451 0.77 0.092046
Target:  5'- aUgCCCGUCAggaccGCGCGCGGgccgccgGGGCUGCc -3'
miRNA:   3'- aGgGGGCAGU-----CGUGCGCUa------CCCGACG- -5'
22727 5' -60.4 NC_005091.1 + 49218 1.11 0.000255
Target:  5'- cUCCCCCGUCAGCACGCGAUGGGCUGCu -3'
miRNA:   3'- -AGGGGGCAGUCGUGCGCUACCCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.