miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22728 5' -50.1 NC_005091.1 + 51177 1.11 0.003166
Target:  5'- uCCAUCAAUGAAAAUCGCCCACGGGCGc -3'
miRNA:   3'- -GGUAGUUACUUUUAGCGGGUGCCCGC- -5'
22728 5' -50.1 NC_005091.1 + 19166 0.79 0.357231
Target:  5'- cCCGUCGAUGAAcuGGUCGCgaucaCCGUGGGCGa -3'
miRNA:   3'- -GGUAGUUACUU--UUAGCG-----GGUGCCCGC- -5'
22728 5' -50.1 NC_005091.1 + 48628 0.76 0.471952
Target:  5'- ---cCGAUGAGGAUCGCUCG-GGGCGg -3'
miRNA:   3'- gguaGUUACUUUUAGCGGGUgCCCGC- -5'
22728 5' -50.1 NC_005091.1 + 7952 0.76 0.492854
Target:  5'- gCCGUUAcgaggacugacAUGGAAGUCGCCauccaaGCGGGCu -3'
miRNA:   3'- -GGUAGU-----------UACUUUUAGCGGg-----UGCCCGc -5'
22728 5' -50.1 NC_005091.1 + 19060 0.74 0.568948
Target:  5'- cCCAcgCAGU-AAGAUCGCCCACGGugaucGCGa -3'
miRNA:   3'- -GGUa-GUUAcUUUUAGCGGGUGCC-----CGC- -5'
22728 5' -50.1 NC_005091.1 + 15352 0.74 0.591292
Target:  5'- -uGUCGGUGAAg--CGCCCACGGaCGg -3'
miRNA:   3'- ggUAGUUACUUuuaGCGGGUGCCcGC- -5'
22728 5' -50.1 NC_005091.1 + 6598 0.74 0.602522
Target:  5'- -aGUCGAUGA---UCGCUCGCGcGGCGu -3'
miRNA:   3'- ggUAGUUACUuuuAGCGGGUGC-CCGC- -5'
22728 5' -50.1 NC_005091.1 + 47064 0.73 0.647611
Target:  5'- gCCAgUCGAUGAAGAUgccgCGCUCGCGGucaGCGg -3'
miRNA:   3'- -GGU-AGUUACUUUUA----GCGGGUGCC---CGC- -5'
22728 5' -50.1 NC_005091.1 + 21619 0.71 0.747041
Target:  5'- cCCcgCAAgc-GGAUCGaCCgGCGGGCGg -3'
miRNA:   3'- -GGuaGUUacuUUUAGC-GGgUGCCCGC- -5'
22728 5' -50.1 NC_005091.1 + 37247 0.7 0.80837
Target:  5'- -gGUCGAUGAccAUCGCCC-CGaGCGa -3'
miRNA:   3'- ggUAGUUACUuuUAGCGGGuGCcCGC- -5'
22728 5' -50.1 NC_005091.1 + 36610 0.7 0.81798
Target:  5'- gCCGUCGAuacUGGAAGU-GCCCGCacugcGGCGa -3'
miRNA:   3'- -GGUAGUU---ACUUUUAgCGGGUGc----CCGC- -5'
22728 5' -50.1 NC_005091.1 + 38892 0.68 0.886654
Target:  5'- gCGUCGcgGUGAGAAgaugcaggCGCUugauUACGGGCGa -3'
miRNA:   3'- gGUAGU--UACUUUUa-------GCGG----GUGCCCGC- -5'
22728 5' -50.1 NC_005091.1 + 37135 0.68 0.886654
Target:  5'- aCgGUCucguUGAAccAAUCGCCCACGuacgcgcccGGCGu -3'
miRNA:   3'- -GgUAGuu--ACUU--UUAGCGGGUGC---------CCGC- -5'
22728 5' -50.1 NC_005091.1 + 57358 0.68 0.886654
Target:  5'- aCgGUCGauGUGAAGAU-GCUCgaaGCGGGCGg -3'
miRNA:   3'- -GgUAGU--UACUUUUAgCGGG---UGCCCGC- -5'
22728 5' -50.1 NC_005091.1 + 5198 0.68 0.891885
Target:  5'- gCCGUCAcgGAAGAaguacgggcCGCCCAUgucacgccccgcagGGGCa -3'
miRNA:   3'- -GGUAGUuaCUUUUa--------GCGGGUG--------------CCCGc -5'
22728 5' -50.1 NC_005091.1 + 51273 0.68 0.908106
Target:  5'- aUCGUCGccGucg--CGCCCGUGGGCGa -3'
miRNA:   3'- -GGUAGUuaCuuuuaGCGGGUGCCCGC- -5'
22728 5' -50.1 NC_005091.1 + 34868 0.67 0.914689
Target:  5'- cUCAUCAAcccgcUGAAgcgGAUCGCCgACGcGcGCGg -3'
miRNA:   3'- -GGUAGUU-----ACUU---UUAGCGGgUGC-C-CGC- -5'
22728 5' -50.1 NC_005091.1 + 30530 0.67 0.920984
Target:  5'- gCGUC-AUGAGcAUCGCCacggACGGGUc -3'
miRNA:   3'- gGUAGuUACUUuUAGCGGg---UGCCCGc -5'
22728 5' -50.1 NC_005091.1 + 22315 0.67 0.937598
Target:  5'- aCCGUCAG-----GUCGCUCGugucgucCGGGCGa -3'
miRNA:   3'- -GGUAGUUacuuuUAGCGGGU-------GCCCGC- -5'
22728 5' -50.1 NC_005091.1 + 31580 0.67 0.938128
Target:  5'- aCgAUCGAUGAAcaccgGcgUGCCCGCGaaGGCu -3'
miRNA:   3'- -GgUAGUUACUU-----UuaGCGGGUGC--CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.