Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22729 | 5' | -58.2 | NC_005091.1 | + | 7065 | 0.67 | 0.471569 |
Target: 5'- -cCGCCAgcaGCUCGaugaCGCGcggGUCGGCGu -3' miRNA: 3'- aaGCGGUa--CGAGCg---GCGC---UAGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 19546 | 0.67 | 0.461638 |
Target: 5'- -aCGCCGcagGC-CGUCGUGuUCGGCGAu -3' miRNA: 3'- aaGCGGUa--CGaGCGGCGCuAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 26035 | 0.68 | 0.442115 |
Target: 5'- -aCGCCGUGg-CGagCGCGAUCAGCu- -3' miRNA: 3'- aaGCGGUACgaGCg-GCGCUAGUCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 7678 | 0.68 | 0.442115 |
Target: 5'- uUUCGCCGcucgguaucUGCgaaGUCGaGAUCAGCGAc -3' miRNA: 3'- -AAGCGGU---------ACGag-CGGCgCUAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 24391 | 0.69 | 0.386494 |
Target: 5'- --gGCCA-GCcuaUCGCCGCGAUCaaGGCGc -3' miRNA: 3'- aagCGGUaCG---AGCGGCGCUAG--UCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 12209 | 0.69 | 0.377682 |
Target: 5'- aUCGCCAucaucgUGCUCGCCGUGccguUCcGCa- -3' miRNA: 3'- aAGCGGU------ACGAGCGGCGCu---AGuCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 27869 | 0.69 | 0.37246 |
Target: 5'- -cUGCCAUGCgUCGCCcuucaacuggaaguuGCcGUCAGCGGu -3' miRNA: 3'- aaGCGGUACG-AGCGG---------------CGcUAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 21506 | 0.69 | 0.343808 |
Target: 5'- aUCGCCgcaagcGUGCUCuGCCGCGucgccUCGGCu- -3' miRNA: 3'- aAGCGG------UACGAG-CGGCGCu----AGUCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 17720 | 0.7 | 0.32771 |
Target: 5'- --aGCCggGCaUgGCCGCGAuuaUCGGCGAc -3' miRNA: 3'- aagCGGuaCG-AgCGGCGCU---AGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 34758 | 0.7 | 0.319873 |
Target: 5'- gUCgGCCAUGUcccgGCCGCGcgcGUCGGCGAu -3' miRNA: 3'- aAG-CGGUACGag--CGGCGC---UAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 43875 | 0.7 | 0.304622 |
Target: 5'- --aGCCAUGCUCuaUGCGcUCGGCGc -3' miRNA: 3'- aagCGGUACGAGcgGCGCuAGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 50709 | 0.71 | 0.278591 |
Target: 5'- gUCGCCAUGCUUguaccgcuccggauaGCCGCGcgCA-CGAc -3' miRNA: 3'- aAGCGGUACGAG---------------CGGCGCuaGUcGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 16447 | 0.71 | 0.262241 |
Target: 5'- gUCGCCAUGCUcgaCGCCGgGAuuuggaccUCGGCc- -3' miRNA: 3'- aAGCGGUACGA---GCGGCgCU--------AGUCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 47070 | 0.72 | 0.25178 |
Target: 5'- -aUGCCAgccagucgaugaagaUGCcgCGCuCGCGGUCAGCGGg -3' miRNA: 3'- aaGCGGU---------------ACGa-GCG-GCGCUAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 53506 | 0.72 | 0.249219 |
Target: 5'- gUCGCCA---UCGCCGUGuucAUCGGCGAa -3' miRNA: 3'- aAGCGGUacgAGCGGCGC---UAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 2082 | 0.72 | 0.242911 |
Target: 5'- gUUCGCCA-GCaUgGCCGCGA-CAGCGu -3' miRNA: 3'- -AAGCGGUaCG-AgCGGCGCUaGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 50929 | 0.72 | 0.242911 |
Target: 5'- -cCGCC--GUUUGCCGCG-UCAGCGAc -3' miRNA: 3'- aaGCGGuaCGAGCGGCGCuAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 8736 | 0.72 | 0.236736 |
Target: 5'- aUCGCCgauaucauuGUGCagGCUGCGAuguUCGGCGAa -3' miRNA: 3'- aAGCGG---------UACGagCGGCGCU---AGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 43190 | 0.73 | 0.202409 |
Target: 5'- aUCGCCccGCUCGUCGCGAa-AGCGc -3' miRNA: 3'- aAGCGGuaCGAGCGGCGCUagUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 40645 | 0.75 | 0.150633 |
Target: 5'- --gGCCGUGCUCGgCGCGGgauaccgacUCGGCGGc -3' miRNA: 3'- aagCGGUACGAGCgGCGCU---------AGUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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