miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2273 5' -62.7 NC_001405.1 + 26738 1.11 0.000064
Target:  5'- aCCGGCGGCAGCGGCAGCGGCAGCAACa -3'
miRNA:   3'- -GGCCGCCGUCGCCGUCGCCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 26287 0.86 0.006351
Target:  5'- gUGGCGGCGGCGGCAGCuGCAGCuuCu -3'
miRNA:   3'- gGCCGCCGUCGCCGUCGcCGUCGuuG- -5'
2273 5' -62.7 NC_001405.1 + 16243 0.84 0.009321
Target:  5'- -gGGCGGCAGUgccgggucGGCGGCGGUGGCGACg -3'
miRNA:   3'- ggCCGCCGUCG--------CCGUCGCCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 2163 0.83 0.011458
Target:  5'- -aGGaagccaGGCGGCGGCGGCGGCAGgAGCa -3'
miRNA:   3'- ggCCg-----CCGUCGCCGUCGCCGUCgUUG- -5'
2273 5' -62.7 NC_001405.1 + 9387 0.81 0.017814
Target:  5'- uCUGGCGGCGGUGGgGGaggggggacaCGGCGGCGACg -3'
miRNA:   3'- -GGCCGCCGUCGCCgUC----------GCCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 33287 0.81 0.018345
Target:  5'- -aGGaCGG-AGCGGCGGCGGCAGCAGu -3'
miRNA:   3'- ggCC-GCCgUCGCCGUCGCCGUCGUUg -5'
2273 5' -62.7 NC_001405.1 + 15049 0.8 0.018891
Target:  5'- aUGGCgcaGGCGGCGGCaacaacAGUGGCAGCGGCg -3'
miRNA:   3'- gGCCG---CCGUCGCCG------UCGCCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 3850 0.8 0.020033
Target:  5'- gCgGGCGGUGGCuGCAGCGGCugaAGCGGCg -3'
miRNA:   3'- -GgCCGCCGUCGcCGUCGCCG---UCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 17558 0.78 0.030177
Target:  5'- aCGGCGGCGGCGGguucCAGUGGUGGUucGGCg -3'
miRNA:   3'- gGCCGCCGUCGCC----GUCGCCGUCG--UUG- -5'
2273 5' -62.7 NC_001405.1 + 10447 0.78 0.03107
Target:  5'- gCCGGCGGCGGUGGUGGaGGCGcGCGGa -3'
miRNA:   3'- -GGCCGCCGUCGCCGUCgCCGU-CGUUg -5'
2273 5' -62.7 NC_001405.1 + 17771 0.77 0.034608
Target:  5'- aCCGGCGGCGGCGcgcgucgcaccgucGCAugcGCGGCGGUAu- -3'
miRNA:   3'- -GGCCGCCGUCGC--------------CGU---CGCCGUCGUug -5'
2273 5' -62.7 NC_001405.1 + 23931 0.76 0.041561
Target:  5'- -gGGCGcGCGGggaGGCGGCGGCacGGCGACg -3'
miRNA:   3'- ggCCGC-CGUCg--CCGUCGCCG--UCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 15277 0.74 0.057113
Target:  5'- cUCGGguUGcGCAGCGGgGGCGGCAGCuuCu -3'
miRNA:   3'- -GGCC--GC-CGUCGCCgUCGCCGUCGuuG- -5'
2273 5' -62.7 NC_001405.1 + 10332 0.74 0.058779
Target:  5'- -aGuGCGGCGGCGGCuGGCGGUAGaggggcCAGCg -3'
miRNA:   3'- ggC-CGCCGUCGCCG-UCGCCGUC------GUUG- -5'
2273 5' -62.7 NC_001405.1 + 24195 0.74 0.062254
Target:  5'- uUGGCGGCAuCGGUggaGGCGGUGGUGGCg -3'
miRNA:   3'- gGCCGCCGUcGCCG---UCGCCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 14197 0.74 0.064066
Target:  5'- gCGGCGcCAGUGGCGGCGGC-GCu-- -3'
miRNA:   3'- gGCCGCcGUCGCCGUCGCCGuCGuug -5'
2273 5' -62.7 NC_001405.1 + 9732 0.73 0.067648
Target:  5'- gCgGGCGGCAGCgGGUGGCGGUcgggguuguuucuGGCGGa -3'
miRNA:   3'- -GgCCGCCGUCG-CCGUCGCCG-------------UCGUUg -5'
2273 5' -62.7 NC_001405.1 + 17257 0.72 0.082816
Target:  5'- gCGGUGGCAGauGCcGCGGUgcaGGCGGCc -3'
miRNA:   3'- gGCCGCCGUCgcCGuCGCCG---UCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 18838 0.72 0.085198
Target:  5'- aCGGCGGCu-CaGCAGCuccucuGGCGGCGACa -3'
miRNA:   3'- gGCCGCCGucGcCGUCG------CCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 9995 0.71 0.095392
Target:  5'- aCGGCGGCGGCGG-AGUuuGGCcguaGGUGGCg -3'
miRNA:   3'- gGCCGCCGUCGCCgUCG--CCG----UCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.