miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2273 5' -62.7 NC_001405.1 + 26233 0.7 0.126139
Target:  5'- gCCcGCGGCuGCugauagGGCuGCGGCGGCGGg -3'
miRNA:   3'- -GGcCGCCGuCG------CCGuCGCCGUCGUUg -5'
2273 5' -62.7 NC_001405.1 + 13849 0.7 0.126139
Target:  5'- gCCGGaGGCAgguucuuuucgcGCuGCGGCuGCAGCAGCg -3'
miRNA:   3'- -GGCCgCCGU------------CGcCGUCGcCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 26832 0.7 0.119332
Target:  5'- gCGGCGGCAGCaGCAGgaGG-AGgAGCg -3'
miRNA:   3'- gGCCGCCGUCGcCGUCg-CCgUCgUUG- -5'
2273 5' -62.7 NC_001405.1 + 26507 0.7 0.112868
Target:  5'- gCCGGCGGCgccugaggAGCGGaGGuuGUAGCGAUg -3'
miRNA:   3'- -GGCCGCCG--------UCGCCgUCgcCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 12180 0.71 0.109761
Target:  5'- -gGGCuGGCGGUGGCAcccGCGcGCgcuGGCAACg -3'
miRNA:   3'- ggCCG-CCGUCGCCGU---CGC-CG---UCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 12316 0.71 0.106733
Target:  5'- cCCGGCGGUgcgGGCGGC-GCuGCAGagcCAGCc -3'
miRNA:   3'- -GGCCGCCG---UCGCCGuCGcCGUC---GUUG- -5'
2273 5' -62.7 NC_001405.1 + 16388 0.71 0.106733
Target:  5'- aUGGCcGCGGCuGCuGCGGCGGCcGCu -3'
miRNA:   3'- gGCCGcCGUCGcCGuCGCCGUCGuUG- -5'
2273 5' -62.7 NC_001405.1 + 9995 0.71 0.095392
Target:  5'- aCGGCGGCGGCGG-AGUuuGGCcguaGGUGGCg -3'
miRNA:   3'- gGCCGCCGUCGCCgUCG--CCG----UCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 18838 0.72 0.085198
Target:  5'- aCGGCGGCu-CaGCAGCuccucuGGCGGCGACa -3'
miRNA:   3'- gGCCGCCGucGcCGUCG------CCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 17257 0.72 0.082816
Target:  5'- gCGGUGGCAGauGCcGCGGUgcaGGCGGCc -3'
miRNA:   3'- gGCCGCCGUCgcCGuCGCCG---UCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 9732 0.73 0.067648
Target:  5'- gCgGGCGGCAGCgGGUGGCGGUcgggguuguuucuGGCGGa -3'
miRNA:   3'- -GgCCGCCGUCG-CCGUCGCCG-------------UCGUUg -5'
2273 5' -62.7 NC_001405.1 + 14197 0.74 0.064066
Target:  5'- gCGGCGcCAGUGGCGGCGGC-GCu-- -3'
miRNA:   3'- gGCCGCcGUCGCCGUCGCCGuCGuug -5'
2273 5' -62.7 NC_001405.1 + 24195 0.74 0.062254
Target:  5'- uUGGCGGCAuCGGUggaGGCGGUGGUGGCg -3'
miRNA:   3'- gGCCGCCGUcGCCG---UCGCCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 10332 0.74 0.058779
Target:  5'- -aGuGCGGCGGCGGCuGGCGGUAGaggggcCAGCg -3'
miRNA:   3'- ggC-CGCCGUCGCCG-UCGCCGUC------GUUG- -5'
2273 5' -62.7 NC_001405.1 + 15277 0.74 0.057113
Target:  5'- cUCGGguUGcGCAGCGGgGGCGGCAGCuuCu -3'
miRNA:   3'- -GGCC--GC-CGUCGCCgUCGCCGUCGuuG- -5'
2273 5' -62.7 NC_001405.1 + 23931 0.76 0.041561
Target:  5'- -gGGCGcGCGGggaGGCGGCGGCacGGCGACg -3'
miRNA:   3'- ggCCGC-CGUCg--CCGUCGCCG--UCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 17771 0.77 0.034608
Target:  5'- aCCGGCGGCGGCGcgcgucgcaccgucGCAugcGCGGCGGUAu- -3'
miRNA:   3'- -GGCCGCCGUCGC--------------CGU---CGCCGUCGUug -5'
2273 5' -62.7 NC_001405.1 + 10447 0.78 0.03107
Target:  5'- gCCGGCGGCGGUGGUGGaGGCGcGCGGa -3'
miRNA:   3'- -GGCCGCCGUCGCCGUCgCCGU-CGUUg -5'
2273 5' -62.7 NC_001405.1 + 17558 0.78 0.030177
Target:  5'- aCGGCGGCGGCGGguucCAGUGGUGGUucGGCg -3'
miRNA:   3'- gGCCGCCGUCGCC----GUCGCCGUCG--UUG- -5'
2273 5' -62.7 NC_001405.1 + 3850 0.8 0.020033
Target:  5'- gCgGGCGGUGGCuGCAGCGGCugaAGCGGCg -3'
miRNA:   3'- -GgCCGCCGUCGcCGUCGCCG---UCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.